Variant report

Variant	rs3728
Chromosome Location	chr6:166778679-166778680
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166754928..166757312-chr6:166776531..166780402,3	K562	blood:
2	chr6:166744531..166747958-chr6:166778201..166781775,3	K562	blood:

Variant related genes	Relation type
ENSG00000198818	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	esv1797072	chr6:166766142-166782143	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3728	C6orf118	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166757000-166779200	Weak transcription	Right Atrium	heart
2	chr6:166773200-166794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:166773400-166790000	Weak transcription	Fetal Brain Male	brain
4	chr6:166774000-166780200	Weak transcription	Small Intestine	intestine
5	chr6:166774400-166790600	Weak transcription	Psoas Muscle	Psoas
6	chr6:166774800-166783400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:166774800-166784000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:166774800-166787200	Weak transcription	Esophagus	oesophagus
9	chr6:166774800-166795000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:166775000-166793800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:166775200-166788400	Weak transcription	HMEC	breast
12	chr6:166775400-166785400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:166775400-166787000	Weak transcription	Fetal Kidney	kidney
14	chr6:166775800-166794800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:166776000-166781200	Strong transcription	HepG2	liver
16	chr6:166776200-166778800	Strong transcription	Placenta	Placenta
17	chr6:166776200-166779000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr6:166776200-166779600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:166776200-166779600	Strong transcription	Thymus	Thymus
20	chr6:166776200-166779800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr6:166776200-166780600	Genic enhancers	Liver	Liver
22	chr6:166776200-166780600	Strong transcription	Fetal Lung	lung
23	chr6:166776200-166780800	Strong transcription	Primary T cells from cord blood	blood
24	chr6:166776200-166782600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:166776200-166782600	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr6:166776200-166782600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr6:166776200-166784600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:166776400-166778800	Strong transcription	Brain Germinal Matrix	brain
29	chr6:166776400-166779600	Strong transcription	Fetal Thymus	thymus
30	chr6:166776400-166780400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:166776400-166780400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:166776400-166780600	Strong transcription	Duodenum Mucosa	Duodenum
33	chr6:166776400-166780600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr6:166776400-166780600	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:166776400-166780800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr6:166776400-166781800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:166776600-166779600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr6:166776600-166779600	Strong transcription	Ovary	ovary
39	chr6:166776600-166780600	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:166776600-166780600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:166776600-166780600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr6:166776600-166780600	Strong transcription	GM12878-XiMat	blood
43	chr6:166776600-166782600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:166776800-166780400	Strong transcription	Dnd41	blood
45	chr6:166777200-166779600	Strong transcription	Primary B cells from cord blood	blood
46	chr6:166777200-166779600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:166777200-166779600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr6:166777400-166780800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr6:166777400-166795400	Weak transcription	Gastric	stomach
50	chr6:166777600-166779200	Enhancers	HUES6 Cell Line	embryonic stem cell

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