Variant report

Variant	rs372898936
Chromosome Location	chr5:177877068-177877069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:177871515..177874034-chr5:177875821..177877688,2	MCF-7	breast:
2	chr5:177876265..177878231-chr5:177880241..177881910,2	K562	blood:
3	chr5:177876786..177879529-chr5:177883377..177886367,2	K562	blood:
4	chr5:177861655..177863245-chr5:177875652..177877153,2	K562	blood:
5	chr5:177633748..177635466-chr5:177877015..177878524,2	K562	blood:
6	chr5:177876012..177877743-chr5:177880216..177882479,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1024689	chr5:177638936-177926244	Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv537968	chr5:177638936-177926244	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv427739	chr5:177766033-177966666	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv883210	chr5:177771925-177980792	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv883213	chr5:177811754-177947771	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv462570	chr5:177860454-178010145	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv600423	chr5:177860454-178010145	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1029822	chr5:177872333-177931889	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1033039	chr5:177873974-177926244	Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv537971	chr5:177873974-177926244	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv883214	chr5:177876309-178047217	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177856800-177887200	Weak transcription	Right Atrium	heart
2	chr5:177871800-177880600	Weak transcription	Fetal Thymus	thymus
3	chr5:177874600-177888200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:177876200-177877400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:177876200-177877600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:177876200-177877600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:177876200-177877600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:177876200-177877600	Enhancers	Gastric	stomach
9	chr5:177876200-177877600	Enhancers	Spleen	Spleen
10	chr5:177876200-177877800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:177876200-177877800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:177876200-177878000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:177876400-177877200	Enhancers	Fetal Heart	heart
14	chr5:177876400-177877400	Weak transcription	Right Ventricle	heart
15	chr5:177876400-177877800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr5:177876400-177877800	Flanking Active TSS	K562	blood
17	chr5:177876600-177877200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
18	chr5:177876800-177877200	Enhancers	Primary hematopoietic stem cells	blood
19	chr5:177876800-177877200	Enhancers	Brain Substantia Nigra	brain
20	chr5:177876800-177877400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
21	chr5:177876800-177877400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr5:177876800-177877600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr5:177876800-177877800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr5:177877000-177877200	Enhancers	Brain Angular Gyrus	brain
25	chr5:177877000-177877200	Enhancers	Brain Cingulate Gyrus	brain
26	chr5:177877000-177877200	Enhancers	Brain Hippocampus Middle	brain
27	chr5:177877000-177877200	Flanking Bivalent TSS/Enh	Stomach Mucosa	stomach
28	chr5:177877000-177877400	Bivalent Enhancer	Fetal Stomach	stomach
29	chr5:177877000-177877600	Enhancers	Pancreas	Pancrea
30	chr5:177877000-177881600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links