Variant report

Variant	rs3729799
Chromosome Location	chr11:47355294-47355295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47355037..47357113-chr11:47358668..47360335,2	K562	blood:
2	chr11:47290102..47294520-chr11:47352678..47355861,4	K562	blood:
3	chr11:47347273..47351481-chr11:47353649..47359054,5	K562	blood:
4	chr11:47350500..47353711-chr11:47353800..47358007,4	MCF-7	breast:
5	chr11:47355176..47357449-chr11:47361021..47363432,2	K562	blood:
6	chr11:47354148..47357317-chr11:47361021..47366088,5	K562	blood:
7	chr11:47344879..47353948-chr11:47354460..47361122,13	K562	blood:
8	chr11:47353935..47356696-chr11:47429697..47432072,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110514	Chromatin interaction
ENSG00000165915	Chromatin interaction
ENSG00000256746	Chromatin interaction
ENSG00000255197	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10769273	1.00[CHD][hapmap]
rs11039258	1.00[LWK][hapmap]
rs11570045	1.00[CHB][hapmap]
rs11570060	1.00[CHB][hapmap]
rs11570082	1.00[CHB][hapmap]
rs11570113	1.00[CHB][hapmap]
rs12286241	1.00[CHB][hapmap]
rs2856655	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs3729950	1.00[CHD][hapmap]
rs3729952	1.00[CHB][hapmap]
rs4647751	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]
rs4647764	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv554209	chr11:47353498-47364127	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47338800-47356200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:47343200-47370600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:47348000-47358200	Weak transcription	K562	blood
4	chr11:47350400-47356800	Genic enhancers	Right Ventricle	heart
5	chr11:47350800-47357400	Weak transcription	HepG2	liver
6	chr11:47351000-47355800	Enhancers	Fetal Heart	heart
7	chr11:47351400-47358800	Weak transcription	Aorta	Aorta
8	chr11:47351400-47375600	Weak transcription	Primary B cells from cord blood	blood
9	chr11:47351600-47358400	Weak transcription	A549	lung
10	chr11:47351600-47358600	Weak transcription	Hela-S3	cervix
11	chr11:47352200-47355400	Weak transcription	Fetal Brain Female	brain
12	chr11:47352400-47355600	Weak transcription	Thymus	Thymus
13	chr11:47352400-47355800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr11:47352400-47356000	Strong transcription	Spleen	Spleen
15	chr11:47352400-47356200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:47352400-47364000	Weak transcription	Lung	lung
17	chr11:47352600-47356000	Weak transcription	NHLF	lung
18	chr11:47352600-47363200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:47352600-47366000	Weak transcription	Brain Germinal Matrix	brain
20	chr11:47352800-47357600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:47352800-47361600	Weak transcription	Brain Anterior Caudate	brain
22	chr11:47353000-47357600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:47353000-47360600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:47353200-47355400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr11:47353200-47356000	Weak transcription	NHEK	skin
26	chr11:47353200-47358600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:47353400-47355800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:47353400-47355800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:47353400-47358400	Weak transcription	Placenta	Placenta
30	chr11:47353600-47358000	Weak transcription	Fetal Stomach	stomach
31	chr11:47353600-47362800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:47353600-47375400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:47354000-47355400	Weak transcription	Fetal Thymus	thymus
34	chr11:47354000-47360400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:47354000-47369800	Weak transcription	Right Atrium	heart
36	chr11:47354200-47358200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:47354200-47361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:47354400-47359200	Strong transcription	Left Ventricle	heart
39	chr11:47354400-47361600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr11:47354400-47362600	Weak transcription	Fetal Intestine Small	intestine
41	chr11:47354600-47358600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr11:47354800-47372800	Weak transcription	Gastric	stomach
43	chr11:47355000-47355400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:47355000-47358200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:47355000-47362800	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:47355200-47356600	Weak transcription	Monocytes-CD14+_RO01746	blood

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