Variant report

Variant	rs373041812
Chromosome Location	chr6:13235879-13235880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13235525..13237571-chr6:13272396..13274160,2	K562	blood:
2	chr6:13234560..13237159-chr6:13237392..13240503,3	K562	blood:

Variant related genes	Relation type
ENSG00000112137	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432849	chr6:13225077-13253733	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	esv1815942	chr6:13235495-13250588	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1817130	chr6:13235495-13250588	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1830412	chr6:13235495-13250588	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1832850	chr6:13235495-13250588	Strong transcription Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1846185	chr6:13235495-13250588	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1848354	chr6:13235495-13250588	Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13208200-13239800	Weak transcription	Brain Substantia Nigra	brain
2	chr6:13217800-13242400	Weak transcription	Pancreas	Pancrea
3	chr6:13218400-13241000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:13227800-13238600	Strong transcription	Stomach Smooth Muscle	stomach
5	chr6:13227800-13240000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:13227800-13244000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:13228000-13236000	Weak transcription	Fetal Brain Male	brain
8	chr6:13228400-13237200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:13229200-13240000	Weak transcription	Fetal Lung	lung
10	chr6:13229400-13248200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:13230000-13236000	Strong transcription	Brain Anterior Caudate	brain
12	chr6:13230000-13239800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:13230200-13242400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:13230600-13253400	Weak transcription	Spleen	Spleen
15	chr6:13230800-13248000	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:13231200-13248200	Weak transcription	Fetal Stomach	stomach
17	chr6:13232800-13239800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:13232800-13240000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:13232800-13240200	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:13232800-13243800	Weak transcription	Fetal Brain Female	brain
21	chr6:13233200-13236200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:13233200-13239800	Weak transcription	Brain Angular Gyrus	brain
23	chr6:13233200-13256000	Weak transcription	Right Ventricle	heart
24	chr6:13233400-13236000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr6:13233600-13236600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:13234000-13236000	Strong transcription	Brain Germinal Matrix	brain
27	chr6:13234000-13236200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:13234400-13236200	Weak transcription	Left Ventricle	heart
29	chr6:13234600-13238800	Weak transcription	Aorta	Aorta
30	chr6:13234600-13239800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:13234600-13267200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:13234800-13236600	Weak transcription	Fetal Heart	heart
33	chr6:13235200-13239800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:13235200-13248200	Weak transcription	HSMMtube	muscle
35	chr6:13235400-13236200	Enhancers	Primary B cells from peripheral blood	blood
36	chr6:13235600-13237400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:13235600-13240000	Weak transcription	Lung	lung
38	chr6:13235800-13236000	Enhancers	Primary B cells from cord blood	blood

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