Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10181816	1.00[CHB][hapmap]
rs10184702	1.00[CHB][hapmap]
rs10184742	0.86[JPT][hapmap]
rs10197209	1.00[CHB][hapmap]
rs10497573	1.00[CHB][hapmap]
rs12469347	1.00[CHB][hapmap]
rs12693105	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1437725	1.00[CHB][hapmap]
rs1513886	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1533303	1.00[CHB][hapmap]
rs1534472	1.00[CHB][hapmap]
rs1545138	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs16864456	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16864479	1.00[CHB][hapmap]
rs2221939	0.84[JPT][hapmap]
rs4893917	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs55681572	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs56234839	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6433615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740977	0.83[ASN][1000 genomes]
rs72936904	0.88[ASN][1000 genomes]
rs7588841	1.00[CHB][hapmap]
rs7601162	0.83[ASN][1000 genomes]
rs840698	1.00[CHB][hapmap]
rs840699	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177655800-177657600	Weak transcription	Ovary	ovary
2	chr2:177655800-177658400	Weak transcription	Brain Germinal Matrix	brain
3	chr2:177657200-177657400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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