Variant report

Variant	rs3732767
Chromosome Location	chr3:151112238-151112239
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:151111572-151112368	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
MED12L	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16863344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16863350	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16863352	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16863356	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16863359	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16863361	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16863376	0.82[YRI][hapmap];0.95[EUR][1000 genomes]
rs2276762	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3821662	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41366744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285879	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62285880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62285881	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62285884	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62285885	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62285886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62285907	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285911	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285912	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285913	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285914	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285915	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285916	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62285919	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62285920	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62285922	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6765412	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7634096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7637803	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7646193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:151065600-151115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:151069400-151129800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:151075600-151136400	Weak transcription	Fetal Brain Female	brain
5	chr3:151087600-151116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:151090200-151142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:151096000-151129000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:151096600-151112400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:151098800-151143400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:151102200-151148600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:151102600-151113600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:151102600-151132000	Weak transcription	Brain Angular Gyrus	brain
13	chr3:151102800-151113400	Weak transcription	NHLF	lung
14	chr3:151102800-151136400	Weak transcription	Brain Substantia Nigra	brain
15	chr3:151102800-151150600	Weak transcription	Brain Anterior Caudate	brain
16	chr3:151104000-151112400	Weak transcription	NHDF-Ad	bronchial
17	chr3:151104200-151139600	Weak transcription	Dnd41	blood
18	chr3:151104400-151113400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:151106000-151130800	Weak transcription	Fetal Intestine Small	intestine
20	chr3:151106000-151134200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:151106000-151154600	Weak transcription	Fetal Muscle Leg	muscle
22	chr3:151106200-151122000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:151106200-151128000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:151106200-151131200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:151106400-151121400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:151106400-151121400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:151109000-151115200	Weak transcription	Placenta	Placenta
28	chr3:151109200-151113200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr3:151110000-151116000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:151110400-151112600	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr3:151110800-151112800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:151111200-151113000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:151111400-151116400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr3:151111600-151113400	Weak transcription	Osteobl	bone
35	chr3:151111800-151113000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr3:151111800-151113200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr3:151111800-151113800	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr3:151112000-151114200	Enhancers	HMEC	breast
39	chr3:151112000-151114200	Enhancers	NHEK	skin
40	chr3:151112200-151112600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr3:151112200-151112600	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr3:151112200-151112800	Enhancers	H1 Cell Line	embryonic stem cell
43	chr3:151112200-151113000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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