Variant report

Variant	rs3734411
Chromosome Location	chr6:151077619-151077620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:151077320..151079270-chr6:151081214..151083626,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11965555	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12664155	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17080212	1.00[CEU][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17080238	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1968998	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1968999	0.84[AMR][1000 genomes]
rs2279628	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs3734408	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3734409	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3734410	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3734413	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4869689	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs4869692	0.86[AMR][1000 genomes]
rs4869693	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4869932	0.85[CEU][hapmap]
rs4869935	1.00[CEU][hapmap]
rs58164449	0.83[EUR][1000 genomes]
rs72570328	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72570331	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72570332	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72570334	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72570348	0.82[EUR][1000 genomes]
rs72570349	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72570350	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72570374	0.92[EUR][1000 genomes]
rs7454101	0.83[EUR][1000 genomes]
rs7748886	1.00[CEU][hapmap];0.86[MEX][hapmap]
rs7772795	1.00[CEU][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes]
rs9478790	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs9478791	1.00[CEU][hapmap];0.86[MEX][hapmap];0.86[AMR][1000 genomes]
rs9480548	1.00[CEU][hapmap]
rs9480550	1.00[CEU][hapmap]
rs9480551	1.00[CEU][hapmap]
rs9918380	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151042600-151085400	Weak transcription	Esophagus	oesophagus
2	chr6:151056000-151087200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
4	chr6:151072400-151079400	Strong transcription	Primary B cells from cord blood	blood
5	chr6:151072800-151085600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:151073600-151078000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:151074600-151078000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:151075000-151078000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:151075000-151078000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:151075200-151077800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:151075200-151085000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:151075200-151093600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:151075400-151078800	Enhancers	Fetal Heart	heart
14	chr6:151075400-151083800	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:151075400-151084400	Weak transcription	Fetal Stomach	stomach
16	chr6:151075400-151085600	Weak transcription	Ovary	ovary
17	chr6:151075400-151086600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:151075600-151082600	Weak transcription	Fetal Kidney	kidney
19	chr6:151075600-151085600	Weak transcription	Fetal Brain Female	brain
20	chr6:151075600-151094400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:151075800-151084600	Weak transcription	Placenta	Placenta
22	chr6:151076200-151079200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr6:151076200-151085400	Weak transcription	Fetal Lung	lung
24	chr6:151076400-151083600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:151076600-151078000	Strong transcription	Fetal Thymus	thymus
26	chr6:151076600-151078000	Enhancers	NH-A	brain
27	chr6:151076800-151080000	Weak transcription	Spleen	Spleen
28	chr6:151076800-151082600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:151077000-151077800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:151077200-151078000	Enhancers	HUVEC	blood vessel
31	chr6:151077400-151077800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:151077400-151080000	Weak transcription	Lung	lung
33	chr6:151077400-151084400	Weak transcription	Thymus	Thymus
34	chr6:151077600-151082600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:151077600-151083600	Weak transcription	Brain Substantia Nigra	brain

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