Variant report

Variant	rs3735372
Chromosome Location	chr7:104892592-104892593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104890216..104893018-chr7:104897423..104900351,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10224564	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10228503	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10230128	0.93[EUR][1000 genomes]
rs10230449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10233695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235252	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10240574	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10248422	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10248954	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249170	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10252295	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10255779	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10258841	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10259721	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10261613	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10261738	0.87[ASN][1000 genomes]
rs10261782	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10272634	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10276153	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10280336	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953473	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11769318	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11769936	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11973742	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11973780	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12537761	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12666949	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12669532	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12705305	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13223001	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13237370	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13246886	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17721991	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17778396	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917047	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1978201	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2040913	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2237611	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237615	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237616	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237618	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237619	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237620	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286124	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299312	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299313	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299314	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299316	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2299320	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299325	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2299326	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2385542	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2385556	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28461911	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28823350	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34003298	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34154773	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34717863	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34789097	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35442357	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35973577	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35993922	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3779208	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3779209	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3801283	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4610671	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4727622	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730078	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55796396	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60446665	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62488069	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6971241	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs717352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73186027	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73188303	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73188305	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7808168	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8180735	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8180737	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9641343	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9641347	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9641348	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104869600-104909200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:104872200-104897200	Weak transcription	Primary T cells from cord blood	blood
3	chr7:104875000-104893800	Genic enhancers	Dnd41	blood
4	chr7:104877200-104898400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:104879000-104907800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:104879600-104897400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:104879800-104896800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:104885400-104907000	Weak transcription	Fetal Intestine Small	intestine
9	chr7:104886000-104902200	Weak transcription	Lung	lung
10	chr7:104886400-104893200	Weak transcription	Left Ventricle	heart
11	chr7:104886400-104916600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:104886600-104895200	Weak transcription	Pancreas	Pancrea
13	chr7:104886600-104896800	Weak transcription	Right Atrium	heart
14	chr7:104886800-104898000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr7:104887000-104897200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:104887200-104897400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr7:104887400-104893800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:104887400-104896800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:104887600-104897200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:104887600-104897200	Weak transcription	HSMM	muscle
21	chr7:104887800-104892600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr7:104887800-104893400	Weak transcription	Fetal Lung	lung
23	chr7:104887800-104895800	Weak transcription	Thymus	Thymus
24	chr7:104887800-104897200	Weak transcription	K562	blood
25	chr7:104887800-104897400	Weak transcription	Fetal Heart	heart
26	chr7:104888000-104897400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:104889400-104893000	Enhancers	Brain Hippocampus Middle	brain
28	chr7:104889400-104893200	Enhancers	Brain Substantia Nigra	brain
29	chr7:104889400-104894000	Enhancers	Brain Cingulate Gyrus	brain
30	chr7:104889400-104896800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr7:104889600-104896000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:104889600-104902200	Weak transcription	HMEC	breast
33	chr7:104889800-104896200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:104890200-104894800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr7:104890200-104897600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:104890400-104897600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr7:104890800-104892800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr7:104890800-104895000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr7:104890800-104896200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr7:104891200-104892800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr7:104891200-104893200	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr7:104891200-104894800	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr7:104891400-104895000	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr7:104891400-104897200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:104891600-104893200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:104891600-104893800	Weak transcription	HSMMtube	muscle
47	chr7:104891600-104895800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:104891600-104896400	Weak transcription	Primary B cells from cord blood	blood
49	chr7:104891600-104896800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr7:104891600-104907800	Weak transcription	Aorta	Aorta

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