Variant report

Variant	rs373682
Chromosome Location	chr7:101689714-101689715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:60639525..60641886-chr7:101687189..101690169,2	MCF-7	breast:
2	chr7:101688104..101690930-chr7:101693641..101697108,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130699	Chromatin interaction
ENSG00000265306	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs375417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs413348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs420709	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs421154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020372	chr7:101420819-101718950	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482846	chr7:101539981-101707666	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv482521	chr7:101604002-101718950	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831080	chr7:101629121-101718950	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1027574	chr7:101654060-101718950	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv607985	chr7:101683563-101718950	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101642800-101697600	Weak transcription	Primary B cells from cord blood	blood
2	chr7:101668000-101707200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:101668600-101694200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:101672200-101692200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:101672200-101697000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:101672400-101694000	Weak transcription	Primary T cells from cord blood	blood
7	chr7:101672400-101697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:101673200-101692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:101673200-101694200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:101674200-101707400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:101674400-101696800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:101674400-101697000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:101674800-101692600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:101679000-101695200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:101683400-101691400	Enhancers	GM12878-XiMat	blood
16	chr7:101684000-101692200	Weak transcription	Fetal Intestine Large	intestine
17	chr7:101684200-101697400	Weak transcription	Liver	Liver
18	chr7:101685600-101697200	Weak transcription	HepG2	liver
19	chr7:101685800-101694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:101685800-101694000	Weak transcription	NHEK	skin
21	chr7:101686000-101691000	Weak transcription	A549	lung
22	chr7:101686400-101694000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:101686800-101693800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:101687800-101689800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:101687800-101690000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr7:101687800-101690400	Enhancers	Fetal Stomach	stomach
27	chr7:101687800-101690600	Enhancers	Fetal Heart	heart
28	chr7:101688000-101689800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr7:101688000-101690200	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr7:101688000-101690200	Enhancers	Left Ventricle	heart
31	chr7:101688000-101690200	Enhancers	HSMM	muscle
32	chr7:101688000-101690800	Enhancers	Right Ventricle	heart
33	chr7:101688200-101690600	Enhancers	Lung	lung
34	chr7:101688400-101690600	Enhancers	Fetal Lung	lung
35	chr7:101688400-101697000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:101688400-101706400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:101688600-101707200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:101688800-101689800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr7:101688800-101690400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr7:101689000-101690200	Enhancers	Fetal Muscle Leg	muscle
41	chr7:101689000-101690400	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr7:101689000-101690600	Enhancers	Ovary	ovary
43	chr7:101689000-101695200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr7:101689200-101689800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr7:101689200-101689800	Enhancers	NHLF	lung
46	chr7:101689200-101690200	Weak transcription	Psoas Muscle	Psoas
47	chr7:101689200-101690200	Enhancers	Osteobl	bone
48	chr7:101689200-101690400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:101689200-101690600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:101689200-101690600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links