Variant report

Variant	rs373734372
Chromosome Location	chr11:57244324-57244325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:57243749..57245778-chr11:57264332..57267920,3	MCF-7	breast:
2	chr11:57243815..57244541-chr7:30543821..30544802,2	Hela-S3	cervix:
3	chr11:57243885..57244747-chr17:16284279..16284941,2	Hela-S3	cervix:
4	chr11:57241042..57244897-chr11:57245318..57249265,7	K562	blood:
5	chr11:57243239..57245827-chr11:57433789..57436480,2	K562	blood:
6	chr11:57091125..57093687-chr11:57243997..57245679,2	MCF-7	breast:
7	chr11:57244134..57244774-chr16:2954529..2955345,2	Hela-S3	cervix:
8	chr11:57227567..57231399-chr11:57243101..57246842,4	MCF-7	breast:
9	chr11:57242576..57245304-chr11:57423792..57425526,2	MCF-7	breast:
10	chr11:57244066..57244696-chr11:57294446..57295016,2	Hela-S3	cervix:
11	chr11:57227974..57230199-chr11:57243067..57246052,3	MCF-7	breast:
12	chr11:57243872..57244499-chr19:18392024..18392697,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000149115	Chromatin interaction
ENSG00000006625	Chromatin interaction
ENSG00000149150	Chromatin interaction
ENSG00000130522	Chromatin interaction
ENSG00000172409	Chromatin interaction
ENSG00000186907	Chromatin interaction
ENSG00000170315	Chromatin interaction
ENSG00000254662	Chromatin interaction
ENSG00000156599	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	esv3404360	chr11:57242601-57245149	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57242000-57244400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:57242000-57244800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:57242200-57244400	Bivalent Enhancer	Fetal Brain Male	brain
4	chr11:57242200-57246400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:57242600-57244600	Flanking Active TSS	GM12878-XiMat	blood
6	chr11:57242800-57245200	Weak transcription	HepG2	liver
7	chr11:57242800-57247600	Weak transcription	K562	blood
8	chr11:57243200-57244600	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr11:57243200-57244600	Bivalent Enhancer	Fetal Heart	heart
10	chr11:57243200-57244600	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
11	chr11:57243200-57244800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr11:57243200-57244800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:57243400-57244400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr11:57243400-57244400	Bivalent Enhancer	Fetal Lung	lung
15	chr11:57243400-57244400	Bivalent Enhancer	Placenta	Placenta
16	chr11:57243400-57244600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:57243400-57244600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:57243400-57244600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:57243400-57244600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
20	chr11:57243400-57244600	Flanking Active TSS	Right Ventricle	heart
21	chr11:57243400-57244600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr11:57243400-57244800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr11:57243400-57244800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:57243400-57244800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:57243600-57244400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:57243600-57244400	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:57243600-57244400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
28	chr11:57243600-57244400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:57243600-57244400	Active TSS	Aorta	Aorta
30	chr11:57243600-57244400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:57243600-57244400	Bivalent/Poised TSS	Fetal Brain Female	brain
32	chr11:57243600-57244600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
33	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:57243600-57244600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
35	chr11:57243600-57244600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:57243600-57244600	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
39	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
40	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr11:57243600-57244600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:57243600-57244600	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr11:57243600-57244600	Flanking Active TSS	Liver	Liver
44	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
45	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
46	chr11:57243600-57244600	Active TSS	Brain Substantia Nigra	brain
47	chr11:57243600-57244600	Flanking Active TSS	Esophagus	oesophagus
48	chr11:57243600-57244600	Active TSS	Pancreatic Islets	Pancreatic Islet
49	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
50	chr11:57243600-57244600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links