Variant report

Variant	rs373828203
Chromosome Location	chr3:81794375-81794376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD1	chr3:81791710-81794472	IMR90	lung:	n/a	n/a
2	FOXA2	chr3:81793979-81794459	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:81788513..81790945-chr3:81793476..81795825,2	MCF-7	breast:
2	chr3:81792798..81795144-chr3:81808070..81811820,3	MCF-7	breast:
3	chr3:81789146..81795604-chr3:81809193..81811958,7	MCF-7	breast:
4	chr3:81789819..81797196-chr3:81807650..81813820,9	K562	blood:

Variant related genes	Relation type
GBE1	TF binding region
ENSG00000114480	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1009607	chr3:81651419-81825151	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv536604	chr3:81651419-81825151	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv834749	chr3:81655377-81818880	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	esv3445196	chr3:81793204-81794937	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3509148	chr3:81793261-81794873	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3509149	chr3:81793261-81794873	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3464209	chr3:81793299-81794891	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3464211	chr3:81793299-81794891	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3464210	chr3:81793304-81794899	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3326	chr3:81793341-81794869	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv3522749	chr3:81793884-81794549	Flanking Active TSS Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv3522750	chr3:81793884-81794549	Weak transcription Enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81776000-81807400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:81781000-81809400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:81782200-81800400	Weak transcription	Primary B cells from cord blood	blood
4	chr3:81782400-81800200	Weak transcription	Left Ventricle	heart
5	chr3:81782800-81796600	Weak transcription	Right Atrium	heart
6	chr3:81789200-81794400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:81789600-81794400	Enhancers	Fetal Heart	heart
8	chr3:81789600-81794600	Enhancers	Hela-S3	cervix
9	chr3:81789600-81794800	Enhancers	Adipose Nuclei	Adipose
10	chr3:81791200-81794800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:81791200-81794800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr3:81791200-81794800	Enhancers	Liver	Liver
13	chr3:81791200-81808800	Weak transcription	Primary T cells from cord blood	blood
14	chr3:81791400-81795400	Weak transcription	Right Ventricle	heart
15	chr3:81791400-81796400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:81791600-81794400	Enhancers	K562	blood
17	chr3:81791600-81803400	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:81791800-81794600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:81792000-81795000	Enhancers	HSMM	muscle
20	chr3:81792000-81795400	Weak transcription	Psoas Muscle	Psoas
21	chr3:81792000-81810200	Weak transcription	Spleen	Spleen
22	chr3:81792200-81794400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:81792200-81794800	Enhancers	HMEC	breast
24	chr3:81792200-81795200	Enhancers	Osteobl	bone
25	chr3:81792200-81795600	Enhancers	NHLF	lung
26	chr3:81792400-81795400	Weak transcription	Ovary	ovary
27	chr3:81792600-81794400	Flanking Active TSS	A549	lung
28	chr3:81792800-81794400	Enhancers	HepG2	liver
29	chr3:81792800-81795400	Enhancers	HUVEC	blood vessel
30	chr3:81792800-81802800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:81793000-81794600	Enhancers	NH-A	brain
32	chr3:81793000-81802800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:81793000-81809600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr3:81793200-81794800	Enhancers	NHEK	skin
35	chr3:81793200-81796800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr3:81793200-81798400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:81793200-81803800	Weak transcription	Aorta	Aorta
38	chr3:81793200-81809200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:81793400-81794400	Enhancers	HSMMtube	muscle
40	chr3:81793400-81795000	Enhancers	Muscle Satellite Cultured Cells	--
41	chr3:81793400-81795400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr3:81793400-81795400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:81793400-81796800	Enhancers	NHDF-Ad	bronchial
44	chr3:81793400-81797000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:81793400-81797400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:81793400-81798600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:81793400-81801600	Weak transcription	Fetal Intestine Small	intestine
48	chr3:81793400-81803600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:81793800-81796000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr3:81793800-81796600	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links