Variant report

Variant	rs3739351
Chromosome Location	chr8:42709586-42709587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:42708651..42710898-chr8:42750173..42752726,2	K562	blood:
2	chr8:42706466..42710235-chr8:42711044..42714932,4	K562	blood:
3	chr8:42705145..42707277-chr8:42708793..42711638,3	K562	blood:
4	chr8:42698030..42699640-chr8:42709503..42711050,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131931	Chromatin interaction
ENSG00000168172	Chromatin interaction
ENSG00000266044	Chromatin interaction
ENSG00000120925	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13266194	1.00[CEU][hapmap]
rs35258203	1.00[LWK][hapmap]
rs36026629	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530880	chr8:41895241-42755506	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1034724	chr8:42386707-42772203	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv428516	chr8:42577171-42731235	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
4	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
5	nsv1024688	chr8:42709414-43333639	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
6	nsv539563	chr8:42709414-43333639	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42698800-42713800	Weak transcription	Spleen	Spleen
2	chr8:42699000-42711400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:42699000-42713000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr8:42699000-42713800	Weak transcription	Gastric	stomach
5	chr8:42699000-42713800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:42699200-42711200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:42699200-42713200	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:42699200-42713400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:42699200-42736400	Weak transcription	Thymus	Thymus
10	chr8:42699400-42709800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr8:42699400-42710000	Weak transcription	Fetal Intestine Large	intestine
12	chr8:42699400-42711200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr8:42699400-42711200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:42699400-42711400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:42699400-42711400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:42699400-42711400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:42699400-42711400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:42699400-42711800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:42699400-42712200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:42699400-42712200	Weak transcription	Left Ventricle	heart
21	chr8:42699400-42713000	Weak transcription	Fetal Brain Male	brain
22	chr8:42699400-42713000	Weak transcription	A549	lung
23	chr8:42699400-42713400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:42699400-42713400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr8:42699400-42713800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:42699400-42713800	Weak transcription	Aorta	Aorta
27	chr8:42699400-42713800	Weak transcription	Colonic Mucosa	Colon
28	chr8:42699400-42713800	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:42699400-42713800	Weak transcription	Fetal Kidney	kidney
30	chr8:42699400-42713800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:42699400-42717600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:42699400-42717600	Weak transcription	Esophagus	oesophagus
33	chr8:42699400-42717600	Weak transcription	Pancreas	Pancrea
34	chr8:42699400-42718000	Weak transcription	Psoas Muscle	Psoas
35	chr8:42699400-42728600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:42699400-42733200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr8:42699400-42741000	Weak transcription	HepG2	liver
38	chr8:42699400-42745800	Weak transcription	Fetal Heart	heart
39	chr8:42699400-42745800	Weak transcription	Small Intestine	intestine
40	chr8:42699400-42750600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:42699600-42711400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr8:42699600-42711400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:42699600-42711800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:42699600-42712000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr8:42699600-42713400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr8:42699600-42713400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:42699600-42713400	Weak transcription	Dnd41	blood
48	chr8:42699600-42713800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr8:42699600-42718000	Weak transcription	NHEK	skin
50	chr8:42699600-42724800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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