Variant report

Variant	rs374028948
Chromosome Location	chr14:71677042-71677043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv832827	chr14:71676178-71833519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71661200-71679400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:71670200-71677200	Weak transcription	Spleen	Spleen
3	chr14:71674000-71679200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:71674000-71680400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:71674400-71679000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:71674600-71679200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:71675600-71679200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:71676400-71677400	Enhancers	Brain Angular Gyrus	brain
9	chr14:71676400-71679800	Enhancers	Brain Cingulate Gyrus	brain
10	chr14:71676600-71677200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:71676600-71677200	Enhancers	Brain Anterior Caudate	brain
12	chr14:71676600-71677400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:71676600-71677400	Enhancers	Brain Substantia Nigra	brain
14	chr14:71676600-71678000	Enhancers	Brain Hippocampus Middle	brain
15	chr14:71677000-71677200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:71677000-71677400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:71677000-71679000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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