Variant report

Variant	rs374030980
Chromosome Location	chr10:49780335-49780336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv550815	chr10:49774633-49794481	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv18030	chr10:49779790-49780486	Enhancers Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49757400-49782200	Weak transcription	HSMMtube	muscle
2	chr10:49761600-49780600	Weak transcription	HUVEC	blood vessel
3	chr10:49763200-49780800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:49773000-49782600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:49773000-49787400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:49773200-49787800	Weak transcription	Brain Angular Gyrus	brain
7	chr10:49773400-49786200	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:49773400-49786600	Strong transcription	HSMM	muscle
9	chr10:49775600-49782600	Weak transcription	Aorta	Aorta
10	chr10:49776400-49786200	Weak transcription	Brain Substantia Nigra	brain
11	chr10:49777000-49787400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:49777200-49781200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:49777400-49787400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:49778000-49780400	Weak transcription	NHLF	lung
15	chr10:49778000-49781200	Weak transcription	NH-A	brain
16	chr10:49778800-49783800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:49779000-49780400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:49779000-49780400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:49779000-49782000	Enhancers	Primary B cells from cord blood	blood
20	chr10:49779000-49782600	Enhancers	Primary B cells from peripheral blood	blood
21	chr10:49779000-49782600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:49779200-49784400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:49779400-49780600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr10:49779400-49788000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr10:49780200-49780800	Enhancers	Osteobl	bone
26	chr10:49780200-49781200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:49780200-49781200	Genic enhancers	Muscle Satellite Cultured Cells	--
28	chr10:49780200-49781600	Enhancers	NHDF-Ad	bronchial
29	chr10:49780200-49783600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:49780200-49783800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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