Variant report

Variant	rs3740655
Chromosome Location	chr11:47591353-47591354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:47591079-47591591	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:47591306-47591677	K562	blood:	n/a	n/a
3	POLR2A	chr11:47591108-47591585	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47591179..47593432-chr11:47610317..47612971,2	K562	blood:

Variant related genes	Relation type
CELF1	TF binding region
ENSG00000172247	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1017731	1.00[LWK][hapmap]
rs4752864	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv314	chr11:47561564-47606256	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47587800-47591400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:47588000-47592200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:47588000-47592800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:47588000-47592800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:47588000-47592800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:47588000-47593000	Weak transcription	Gastric	stomach
7	chr11:47588000-47593000	Weak transcription	Pancreas	Pancrea
8	chr11:47588000-47593600	Weak transcription	Psoas Muscle	Psoas
9	chr11:47588000-47594000	Weak transcription	Colonic Mucosa	Colon
10	chr11:47588000-47594200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:47588000-47594200	Weak transcription	Esophagus	oesophagus
12	chr11:47588000-47594400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:47588000-47594600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:47588000-47599800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:47588000-47600000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:47588200-47592400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:47588200-47592600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:47588200-47594200	Weak transcription	Right Ventricle	heart
19	chr11:47588200-47594800	Weak transcription	Small Intestine	intestine
20	chr11:47588400-47591400	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:47588400-47591400	Weak transcription	Thymus	Thymus
22	chr11:47588400-47591800	Weak transcription	Adipose Nuclei	Adipose
23	chr11:47588400-47592000	Weak transcription	Brain Anterior Caudate	brain
24	chr11:47588400-47593000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:47588400-47593000	Weak transcription	Fetal Heart	heart
26	chr11:47588400-47593400	Weak transcription	Fetal Brain Male	brain
27	chr11:47588400-47593600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr11:47588400-47594400	Weak transcription	Stomach Mucosa	stomach
29	chr11:47588600-47591400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:47588600-47591400	Weak transcription	K562	blood
31	chr11:47588600-47591600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:47588600-47591800	Weak transcription	Primary B cells from cord blood	blood
33	chr11:47588600-47592200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:47588600-47592600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:47588600-47592800	Weak transcription	Liver	Liver
36	chr11:47588600-47593000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr11:47588600-47593000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:47588600-47593800	Weak transcription	Fetal Kidney	kidney
39	chr11:47588600-47594600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:47588600-47598600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr11:47588600-47598800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:47588600-47599000	Strong transcription	Fetal Stomach	stomach
43	chr11:47588600-47599200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:47588800-47592600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr11:47589200-47591400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:47589200-47592200	Strong transcription	Brain Hippocampus Middle	brain
47	chr11:47589200-47592600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:47589200-47594600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr11:47589200-47599000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:47589200-47599000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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