Variant report

Variant	rs3741162
Chromosome Location	chr11:72091228-72091229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11824758	0.83[AFR][1000 genomes]
rs11826227	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11827506	0.85[AFR][1000 genomes]
rs11828128	0.84[ASW][hapmap];1.00[YRI][hapmap]
rs17162146	1.00[ASW][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs56379191	0.81[ASN][1000 genomes]
rs58007847	0.85[AFR][1000 genomes]
rs7118697	0.88[YRI][hapmap]
rs7127541	1.00[CEU][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72045800-72094600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:72050000-72092200	Weak transcription	Pancreas	Pancrea
3	chr11:72061400-72092200	Weak transcription	Gastric	stomach
4	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
5	chr11:72066600-72095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:72067000-72092000	Weak transcription	HepG2	liver
7	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:72069600-72094600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:72069800-72098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:72070600-72094000	Weak transcription	Fetal Thymus	thymus
11	chr11:72072800-72092400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:72072800-72098800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:72073400-72103200	Weak transcription	K562	blood
14	chr11:72075000-72099400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr11:72078000-72094800	Weak transcription	Liver	Liver
16	chr11:72078600-72093000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:72078800-72091400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:72079600-72094200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:72079600-72094800	Weak transcription	A549	lung
20	chr11:72080200-72093400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:72081200-72093200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:72084200-72096200	Weak transcription	Small Intestine	intestine
23	chr11:72084400-72093400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:72084600-72092600	Weak transcription	Fetal Intestine Large	intestine
25	chr11:72084600-72095000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:72087200-72093200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:72088400-72095600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:72088600-72091400	Enhancers	Ovary	ovary
29	chr11:72088800-72091800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:72089200-72091400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:72089200-72091400	Strong transcription	Spleen	Spleen
32	chr11:72089200-72091600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:72089200-72091600	Strong transcription	GM12878-XiMat	blood
34	chr11:72089400-72091600	Strong transcription	Primary T cells from cord blood	blood
35	chr11:72089400-72091800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:72089400-72092000	Enhancers	Colon Smooth Muscle	Colon
37	chr11:72089400-72093200	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr11:72089600-72091400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:72089600-72091600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:72089600-72091600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:72089600-72092000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:72089800-72091400	Enhancers	Brain Angular Gyrus	brain
43	chr11:72089800-72091600	Enhancers	Brain Anterior Caudate	brain
44	chr11:72089800-72091600	Enhancers	Brain Cingulate Gyrus	brain
45	chr11:72089800-72092800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr11:72090000-72091400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:72090000-72091400	Strong transcription	NHEK	skin
48	chr11:72090000-72091600	Enhancers	Rectal Smooth Muscle	rectum
49	chr11:72090000-72092200	Enhancers	Brain Hippocampus Middle	brain
50	chr11:72090200-72091600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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