Variant report

Variant	rs374204
Chromosome Location	chr5:118133786-118133787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1949100	0.85[EUR][1000 genomes]
rs2216563	0.81[EUR][1000 genomes]
rs365096	0.85[EUR][1000 genomes]
rs413524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs421322	0.82[ASN][1000 genomes]
rs443574	0.86[ASN][1000 genomes]
rs453422	0.82[EUR][1000 genomes]
rs583982	0.94[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs589297	0.84[EUR][1000 genomes]
rs602868	0.80[ASN][1000 genomes]
rs602878	0.86[JPT][hapmap]
rs602886	0.84[EUR][1000 genomes]
rs602915	0.83[EUR][1000 genomes]
rs623228	0.83[EUR][1000 genomes]
rs630247	0.83[EUR][1000 genomes]
rs635286	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs643819	0.83[EUR][1000 genomes]
rs645325	0.83[EUR][1000 genomes]
rs655599	0.83[EUR][1000 genomes]
rs657948	0.82[EUR][1000 genomes]
rs667101	0.81[JPT][hapmap]
rs673381	0.94[EUR][1000 genomes]
rs673479	0.95[EUR][1000 genomes]
rs682857	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv882768	chr5:118088385-118133786	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv882769	chr5:118088385-118154368	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv882770	chr5:118089798-118133786	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv599562	chr5:118122504-118230640	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs374204	TNFAIP8	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118127000-118160000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:118127600-118143200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:118127800-118143400	Weak transcription	Psoas Muscle	Psoas
4	chr5:118130400-118135800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:118132200-118137200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:118132400-118134000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:118132400-118135600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:118132600-118136800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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