Variant report

Variant	rs3742182
Chromosome Location	chr13:111375132-111375133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:111370419..111377483-chr13:111379803..111385146,6	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11843661	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12184676	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34523940	0.93[ASN][1000 genomes]
rs3858823	0.83[ASN][1000 genomes]
rs3934248	0.84[ASN][1000 genomes]
rs4773239	0.85[EUR][1000 genomes]
rs61969072	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61969074	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61969076	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61971610	0.85[ASN][1000 genomes]
rs61971611	0.93[ASN][1000 genomes]
rs6492309	0.84[ASN][1000 genomes]
rs71445078	0.85[EUR][1000 genomes]
rs7992818	0.88[EUR][1000 genomes]
rs7999536	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7999702	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9515270	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9521906	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9521911	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9521916	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9521921	0.84[ASN][1000 genomes]
rs9521923	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9521925	0.84[ASN][1000 genomes]
rs9521926	0.84[ASN][1000 genomes]
rs9583531	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9583532	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949634	chr13:111151460-111582996	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
2	nsv1044340	chr13:111234073-111692994	Bivalent Enhancer Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
3	nsv1048700	chr13:111265350-111658617	Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	240 gene(s)	inside rSNPs	diseases
4	nsv901014	chr13:111302922-111380684	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	197 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111369200-111376000	Weak transcription	Colon Smooth Muscle	Colon
2	chr13:111369200-111376200	Weak transcription	HSMMtube	muscle
3	chr13:111369200-111381400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:111370200-111379000	Weak transcription	HUVEC	blood vessel
5	chr13:111370200-111383400	Weak transcription	Right Atrium	heart
6	chr13:111370400-111379400	Weak transcription	Fetal Kidney	kidney
7	chr13:111370800-111375400	Weak transcription	Brain Anterior Caudate	brain
8	chr13:111370800-111375600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:111370800-111375800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:111370800-111377800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr13:111370800-111378000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr13:111370800-111379200	Weak transcription	Psoas Muscle	Psoas
13	chr13:111370800-111380200	Weak transcription	HSMM	muscle
14	chr13:111370800-111380800	Weak transcription	Hela-S3	cervix
15	chr13:111371000-111377800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr13:111371000-111377800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr13:111371200-111375600	Strong transcription	Dnd41	blood
18	chr13:111371400-111375200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:111371400-111376400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr13:111371600-111375200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr13:111371600-111375200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr13:111371600-111375400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr13:111371600-111375400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:111371600-111377800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr13:111371800-111375200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr13:111371800-111376000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr13:111372000-111375600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr13:111372200-111376000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:111372200-111376200	Strong transcription	Thymus	Thymus
30	chr13:111372200-111376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr13:111372200-111376600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr13:111372200-111377400	Weak transcription	Left Ventricle	heart
33	chr13:111372200-111377800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr13:111372200-111378200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr13:111372200-111379000	Weak transcription	Small Intestine	intestine
36	chr13:111372200-111379600	Weak transcription	NHLF	lung
37	chr13:111372200-111380000	Weak transcription	Gastric	stomach
38	chr13:111372200-111381600	Weak transcription	A549	lung
39	chr13:111372200-111383400	Weak transcription	Esophagus	oesophagus
40	chr13:111372200-111383600	Weak transcription	Aorta	Aorta
41	chr13:111372200-111384200	Weak transcription	Primary hematopoietic stem cells	blood
42	chr13:111372400-111375400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr13:111372400-111375400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr13:111372400-111375400	Weak transcription	Spleen	Spleen
45	chr13:111372400-111379200	Weak transcription	Lung	lung
46	chr13:111372400-111379200	Weak transcription	Pancreas	Pancrea
47	chr13:111372400-111379200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr13:111372400-111379600	Weak transcription	Brain Substantia Nigra	brain
49	chr13:111372400-111380000	Weak transcription	Colonic Mucosa	Colon
50	chr13:111372400-111381400	Weak transcription	Right Ventricle	heart

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