Variant report

Variant	rs3742914
Chromosome Location	chr14:70498407-70498408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70497570..70499518-chr14:70502839..70505709,2	MCF-7	breast:
2	chr14:70498095..70500229-chr14:70502609..70504593,3	K562	blood:
3	chr14:70278462..70280862-chr14:70497209..70499902,2	MCF-7	breast:
4	chr14:70494747..70496910-chr14:70498282..70501125,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10130486	1.00[CHD][hapmap]
rs10140220	1.00[CEU][hapmap]
rs12435324	1.00[CEU][hapmap]
rs17107529	1.00[CEU][hapmap]
rs17107556	1.00[CEU][hapmap]
rs17107580	1.00[CEU][hapmap];0.85[CHD][hapmap]
rs17175227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227401	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs227440	1.00[CEU][hapmap]
rs227441	1.00[CEU][hapmap]
rs227443	1.00[CEU][hapmap]
rs7158909	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
4	nsv817638	chr14:70489680-70500973	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70476000-70500000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:70476200-70499000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:70486000-70500400	Weak transcription	Aorta	Aorta
4	chr14:70486400-70502800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:70488000-70498600	Weak transcription	Gastric	stomach
6	chr14:70489000-70499200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:70490200-70499200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr14:70490600-70498600	Weak transcription	NHEK	skin
9	chr14:70491400-70498600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:70492200-70499400	Weak transcription	Brain Germinal Matrix	brain
11	chr14:70493800-70499000	Weak transcription	HepG2	liver
12	chr14:70494200-70499600	Weak transcription	Spleen	Spleen
13	chr14:70494200-70499800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:70494400-70500200	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:70494400-70500400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:70494600-70498600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:70494600-70498800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr14:70495800-70498600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:70496800-70498600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:70496800-70501000	Weak transcription	Pancreas	Pancrea
21	chr14:70497000-70499400	Weak transcription	Brain Substantia Nigra	brain
22	chr14:70497200-70503000	Weak transcription	Liver	Liver
23	chr14:70497400-70508400	Weak transcription	Fetal Brain Female	brain
24	chr14:70497600-70499600	Genic enhancers	Hela-S3	cervix
25	chr14:70498200-70500200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr14:70498400-70499000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:70498400-70500000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:70498400-70500000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:70498400-70500000	Enhancers	HMEC	breast

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