Variant report

Variant	rs374479
Chromosome Location	chr5:80998915-80998916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:80991735..80993822-chr5:80998688..81000196,2	K562	blood:
2	chr5:80991735..80994087-chr5:80998688..81001325,2	K562	blood:
3	chr5:80998159..81001011-chr5:81003180..81006000,3	K562	blood:
4	chr5:80997712..81001011-chr5:81003942..81006000,3	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1023747	0.85[CHB][hapmap]
rs12186581	0.80[ASN][1000 genomes]
rs13156146	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13160079	0.84[ASN][1000 genomes]
rs1347597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2043646	0.82[CEU][hapmap]
rs34007998	0.84[ASN][1000 genomes]
rs365241	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs371705	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs382523	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs389860	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs396231	0.85[CHB][hapmap]
rs398666	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs402061	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs402352	0.85[CHB][hapmap];0.98[ASN][1000 genomes]
rs403777	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs403795	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs406283	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs406292	0.82[CEU][hapmap]
rs411520	0.98[ASN][1000 genomes]
rs411990	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs418033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs419017	0.81[CEU][hapmap]
rs419435	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs420202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421348	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs422523	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs424762	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs424844	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs425897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432617	0.98[ASN][1000 genomes]
rs437417	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs446064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs452314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs454487	0.82[CEU][hapmap]
rs585558	0.82[CEU][hapmap]
rs586695	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6898782	0.85[CHB][hapmap]
rs827065	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882233	chr5:80849084-81049187	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv882235	chr5:80909132-81006061	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830361	chr5:80909811-81080409	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882236	chr5:80930992-80999768	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv882237	chr5:80938489-81006061	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3330268	chr5:80972245-81001669	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830362	chr5:80990787-81184249	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80983800-81011600	Weak transcription	Left Ventricle	heart
2	chr5:80984000-81011600	Weak transcription	Lung	lung
3	chr5:80984200-81032000	Weak transcription	Esophagus	oesophagus
4	chr5:80984400-81015000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:80990800-80999200	Weak transcription	Ovary	ovary
6	chr5:80995000-81005800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:80996000-81014000	Weak transcription	Fetal Stomach	stomach
8	chr5:80996400-80999800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:80996400-81000800	Weak transcription	Aorta	Aorta
10	chr5:80996600-81003000	Weak transcription	K562	blood
11	chr5:80996600-81007200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:80996600-81013600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:80996800-80999800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:80996800-81001800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:80996800-81005000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:80996800-81011000	Weak transcription	Psoas Muscle	Psoas
17	chr5:80996800-81013400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:80996800-81014000	Weak transcription	Fetal Lung	lung
19	chr5:80997000-81004800	Weak transcription	Fetal Brain Female	brain
20	chr5:80997000-81013000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr5:80997200-80999800	Weak transcription	Thymus	Thymus
22	chr5:80997200-81001600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:80997200-81005600	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:80997200-81013600	Weak transcription	Primary B cells from cord blood	blood
25	chr5:80997200-81013800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr5:80997400-81008000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:80997600-80999600	Weak transcription	Fetal Thymus	thymus
28	chr5:80997600-81003000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr5:80997600-81004800	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:80997800-80999000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr5:80997800-81007400	Weak transcription	Primary T cells from cord blood	blood
32	chr5:80997800-81021600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr5:80998200-80999800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr5:80998200-81003200	Weak transcription	HSMM	muscle
35	chr5:80998800-80999800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:80998800-80999800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:80998800-81005000	Strong transcription	Dnd41	blood

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