Variant report

Variant	rs3750231
Chromosome Location	chr8:125620661-125620662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125620520..125623570-chr8:125628485..125632186,3	MCF-7	breast:
2	chr8:125617349..125622220-chr8:125623810..125627112,5	K562	blood:
3	chr8:125617959..125620895-chr8:125642902..125645461,3	MCF-7	breast:
4	chr8:125619061..125621070-chr8:125864573..125866368,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1023694	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes]
rs11780712	0.95[ASN][1000 genomes]
rs12545201	1.00[AFR][1000 genomes]
rs16893079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899847	0.85[AMR][1000 genomes]
rs16899858	0.95[AMR][1000 genomes]
rs16899867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16899873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16899876	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16899898	1.00[AFR][1000 genomes]
rs1978662	0.93[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs4871521	0.91[ASN][1000 genomes]
rs919543	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs919547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs934323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:125610600-125622800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:125612000-125621800	Enhancers	Spleen	Spleen
4	chr8:125613200-125622800	Weak transcription	Gastric	stomach
5	chr8:125614000-125621200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:125614000-125628800	Enhancers	Liver	Liver
7	chr8:125614200-125622400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:125614400-125627400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:125614800-125625600	Enhancers	Fetal Muscle Leg	muscle
10	chr8:125615400-125622800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:125615800-125620800	Enhancers	K562	blood
12	chr8:125616000-125621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:125616000-125630200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:125617200-125621400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:125617200-125622200	Enhancers	Right Atrium	heart
16	chr8:125617400-125626000	Weak transcription	Fetal Intestine Small	intestine
17	chr8:125617400-125626200	Enhancers	Fetal Thymus	thymus
18	chr8:125617600-125621000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr8:125617600-125625000	Enhancers	Fetal Brain Male	brain
20	chr8:125617600-125627000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:125617600-125627400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr8:125617600-125631400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr8:125617800-125622400	Weak transcription	Fetal Stomach	stomach
24	chr8:125617800-125622600	Weak transcription	NHDF-Ad	bronchial
25	chr8:125617800-125623000	Enhancers	Brain Hippocampus Middle	brain
26	chr8:125617800-125623600	Enhancers	Brain Cingulate Gyrus	brain
27	chr8:125617800-125628600	Enhancers	Primary B cells from peripheral blood	blood
28	chr8:125618000-125621200	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr8:125618000-125621400	Weak transcription	Pancreas	Pancrea
30	chr8:125618000-125622200	Enhancers	Brain Germinal Matrix	brain
31	chr8:125618000-125623600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:125618000-125624400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr8:125618000-125626200	Enhancers	Thymus	Thymus
34	chr8:125618000-125632800	Weak transcription	HUVEC	blood vessel
35	chr8:125618000-125640400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr8:125618200-125624200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:125618400-125621000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr8:125618600-125623400	Enhancers	Right Ventricle	heart
39	chr8:125618600-125626200	Enhancers	Fetal Heart	heart
40	chr8:125618800-125620800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:125618800-125620800	Enhancers	Brain Angular Gyrus	brain
42	chr8:125618800-125621200	Flanking Active TSS	GM12878-XiMat	blood
43	chr8:125618800-125626200	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr8:125619000-125622200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr8:125619200-125622200	Weak transcription	Fetal Lung	lung
46	chr8:125619200-125630800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr8:125619200-125649000	Weak transcription	Colonic Mucosa	Colon
48	chr8:125619400-125622400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr8:125619400-125622800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr8:125619400-125623000	Weak transcription	Lung	lung

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