Variant report

Variant	rs375268809
Chromosome Location	chr3:23258829-23258830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23245705..23247404-chr3:23258369..23260756,2	K562	blood:
2	chr3:23247857..23249626-chr3:23258764..23261200,2	MCF-7	breast:
3	chr3:23252644..23254931-chr3:23257139..23259977,2	MCF-7	breast:
4	chr3:23243052..23244840-chr3:23256645..23259135,2	K562	blood:

Variant related genes	Relation type
ENSG00000233153	Chromatin interaction
ENSG00000182247	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23245800-23262800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:23246000-23260800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:23246200-23259000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:23246200-23259000	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:23246200-23259200	Weak transcription	NH-A	brain
6	chr3:23246200-23260600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:23246200-23264200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:23246400-23259400	Weak transcription	Osteobl	bone
9	chr3:23246400-23261200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:23246400-23273400	Weak transcription	Aorta	Aorta
11	chr3:23246600-23259000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:23246600-23259000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:23246600-23259200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:23246600-23259200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:23246600-23260000	Weak transcription	NHEK	skin
16	chr3:23246600-23260800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:23246600-23262400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:23246800-23259000	Weak transcription	NHLF	lung
19	chr3:23246800-23259800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:23248200-23259000	Weak transcription	A549	lung
21	chr3:23248200-23260600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:23248800-23265800	Weak transcription	Primary T cells from cord blood	blood
23	chr3:23249000-23273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:23249400-23260600	Weak transcription	HSMMtube	muscle
25	chr3:23251600-23259200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:23251600-23260400	Weak transcription	HMEC	breast
27	chr3:23251600-23262800	Weak transcription	Adipose Nuclei	Adipose
28	chr3:23251800-23260600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:23251800-23260600	Weak transcription	Esophagus	oesophagus
30	chr3:23251800-23260800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:23252800-23260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:23253400-23260800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr3:23255600-23260600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:23257000-23259600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr3:23257000-23263200	Enhancers	Brain Hippocampus Middle	brain
36	chr3:23257200-23259600	Enhancers	Brain Angular Gyrus	brain
37	chr3:23257400-23259600	Enhancers	Brain Substantia Nigra	brain
38	chr3:23257600-23260600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr3:23258000-23259600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr3:23258200-23259000	Enhancers	Psoas Muscle	Psoas
41	chr3:23258200-23259600	Enhancers	Rectal Smooth Muscle	rectum
42	chr3:23258200-23259800	Enhancers	Fetal Heart	heart
43	chr3:23258400-23259600	Enhancers	Brain Anterior Caudate	brain
44	chr3:23258400-23259600	Enhancers	Brain Cingulate Gyrus	brain
45	chr3:23258400-23260000	Strong transcription	Primary B cells from cord blood	blood
46	chr3:23258600-23260600	Weak transcription	Right Ventricle	heart
47	chr3:23258800-23259200	Enhancers	GM12878-XiMat	blood
48	chr3:23258800-23259200	Strong transcription	HSMM	muscle
49	chr3:23258800-23259600	Enhancers	Fetal Lung	lung
50	chr3:23258800-23259600	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links