Variant report

Variant	rs3753224
Chromosome Location	chr1:210630826-210630827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17016283	0.89[AFR][1000 genomes]
rs17016287	0.89[AFR][1000 genomes]
rs7555818	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:210611600-210639600	Weak transcription	Aorta	Aorta
3	chr1:210614600-210641200	Weak transcription	Gastric	stomach
4	chr1:210620200-210637800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:210622400-210631600	Weak transcription	HSMM	muscle
6	chr1:210625800-210638800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:210626200-210650000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:210628400-210640800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:210629200-210631000	Enhancers	Fetal Muscle Leg	muscle
10	chr1:210630000-210641200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:210630200-210641400	Weak transcription	Liver	Liver
12	chr1:210630600-210631200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:210630600-210634200	Strong transcription	HSMMtube	muscle
14	chr1:210630600-210637800	Weak transcription	Left Ventricle	heart
15	chr1:210630800-210631200	Enhancers	Fetal Kidney	kidney
16	chr1:210630800-210631400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:210630800-210631400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr1:210630800-210631400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:210630800-210631400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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