Variant report

Variant	rs375360189
Chromosome Location	chr2:182355985-182355986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv834476	chr2:182179249-182360259	Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2620400	chr2:182355188-182356913	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3360174	chr2:182355257-182357280	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv6797	chr2:182355725-182356557	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv1979132	chr2:182355775-182356494	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv3458793	chr2:182355862-182356375	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3507039	chr2:182355878-182356395	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3507036	chr2:182355881-182356373	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv3507038	chr2:182355895-182356339	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
14	esv3507035	chr2:182355897-182356323	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3458792	chr2:182355902-182356354	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3458795	chr2:182355917-182356314	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
17	esv3507037	chr2:182355922-182356345	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv3507041	chr2:182355928-182356339	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
19	esv3344	chr2:182355932-182356344	Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3330582	chr2:182355942-182356315	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
21	esv3458794	chr2:182355956-182356294	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
22	esv2517753	chr2:182355972-182356286	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
23	esv3507042	chr2:182355972-182356288	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
24	esv3458796	chr2:182355972-182356299	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv3507043	chr2:182355972-182356299	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
26	esv1005604	chr2:182355980-182356294	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
27	esv1571329	chr2:182355983-182356298	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182324400-182410400	Weak transcription	NHLF	lung
2	chr2:182324600-182360400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:182330000-182390200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:182331400-182363400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:182331400-182382200	Weak transcription	HMEC	breast
6	chr2:182334600-182381400	Weak transcription	Fetal Muscle Leg	muscle
7	chr2:182335000-182366800	Weak transcription	Fetal Stomach	stomach
8	chr2:182335000-182405800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr2:182335200-182356200	Weak transcription	Gastric	stomach
10	chr2:182336800-182382800	Weak transcription	Small Intestine	intestine
11	chr2:182338200-182363400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:182338200-182378400	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr2:182338200-182383400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:182338200-182399400	Weak transcription	Colonic Mucosa	Colon
15	chr2:182338200-182406800	Strong transcription	Fetal Thymus	thymus
16	chr2:182338200-182406800	Weak transcription	Spleen	Spleen
17	chr2:182338400-182382200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:182338600-182405600	Strong transcription	Primary B cells from peripheral blood	blood
19	chr2:182339000-182381000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:182339200-182380600	Strong transcription	Dnd41	blood
21	chr2:182339400-182405600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:182341800-182363400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:182344400-182362000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr2:182344400-182367200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr2:182346000-182356000	Strong transcription	HSMMtube	muscle
26	chr2:182346000-182378600	Weak transcription	Lung	lung
27	chr2:182346800-182361400	Weak transcription	Fetal Intestine Small	intestine
28	chr2:182347200-182399800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr2:182347400-182363400	Weak transcription	HSMM	muscle
30	chr2:182348200-182377400	Weak transcription	NH-A	brain
31	chr2:182348600-182359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr2:182349000-182360400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:182349400-182356200	Weak transcription	Liver	Liver
34	chr2:182349600-182365000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr2:182349600-182405800	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr2:182350400-182384600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr2:182351000-182360000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:182351000-182360000	Weak transcription	NHDF-Ad	bronchial
39	chr2:182351200-182359800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr2:182351600-182363400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr2:182352200-182356400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr2:182352200-182360000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr2:182352200-182360600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:182352400-182357200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr2:182352600-182356400	Weak transcription	Thymus	Thymus
46	chr2:182352800-182357600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr2:182353000-182358000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr2:182353000-182358000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr2:182353200-182358800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr2:182353800-182357600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links