The 2.0 version of rSNPBase

Variant report

Variant rs3753878
Chromosome Location chr1:220934564-220934565
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220922600-220943800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr1:220922600-220946400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr1:220922800-220959600 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr1:220922800-220959600 Weak transcription Placenta Amnion Placenta Amnion
5 chr1:220923200-220948000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:220924200-220936000 Weak transcription Primary neutrophils fromperipheralblood blood
7 chr1:220924600-220936800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr1:220924600-220944000 Weak transcription Brain Hippocampus Middle brain
9 chr1:220924800-220945600 Weak transcription Osteobl bone
10 chr1:220925000-220946000 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr1:220925000-220959400 Weak transcription Brain Angular Gyrus brain
12 chr1:220925200-220942000 Weak transcription Rectal Smooth Muscle rectum
13 chr1:220925200-220943400 Weak transcription Brain Cingulate Gyrus brain
14 chr1:220925400-220950200 Weak transcription HUES6 Cell Line embryonic stem cell
15 chr1:220925800-220938400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:220927800-220938600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:220929400-220940600 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr1:220929600-220934600 Weak transcription HepG2 liver
19 chr1:220929600-220935800 Weak transcription Esophagus oesophagus
20 chr1:220929600-220943000 Weak transcription Brain Germinal Matrix brain
21 chr1:220929800-220940800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr1:220930000-220934600 Weak transcription Breast Myoepithelial Primary Cells Breast
23 chr1:220930000-220940600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:220930000-220942400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr1:220930000-220943400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr1:220930000-220946000 Weak transcription Fetal Brain Female brain
27 chr1:220930000-220950000 Weak transcription Fetal Brain Male brain
28 chr1:220930000-220950200 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr1:220930000-220950400 Weak transcription H9 Cell Line embryonic stem cell
30 chr1:220930000-220959600 Weak transcription Psoas Muscle Psoas
31 chr1:220930200-220935200 Weak transcription Placenta Placenta
32 chr1:220930200-220935800 Weak transcription Colonic Mucosa Colon
33 chr1:220930200-220936200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:220930200-220937800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:220930200-220940800 Weak transcription NHLF lung
36 chr1:220930200-220944000 Weak transcription Colon Smooth Muscle Colon
37 chr1:220930200-220950000 Weak transcription Brain Anterior Caudate brain
38 chr1:220930400-220934600 Weak transcription Stomach Smooth Muscle stomach
39 chr1:220930400-220950000 Weak transcription iPS-18 Cell Line embryonic stem cell
40 chr1:220930400-220959600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:220930600-220950000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:220930800-220935200 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr1:220930800-220946000 Weak transcription iPS-20b Cell Line embryonic stem cell
44 chr1:220931000-220934600 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr1:220931000-220934600 Weak transcription Skeletal Muscle Male skeletal muscle
46 chr1:220931000-220935800 Weak transcription Spleen Spleen
47 chr1:220931000-220946200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
48 chr1:220931200-220934600 Weak transcription Brain Inferior Temporal Lobe brain
49 chr1:220931200-220934600 Weak transcription Duodenum Mucosa Duodenum
50 chr1:220931200-220934600 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015