Variant report

Variant	rs375403688
Chromosome Location	chr19:36848248-36848249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2474	chr19:36804469-36865415	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064343	chr19:36807288-36853102	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv1066190	chr19:36830299-36852877	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv174	chr19:36831719-36865415	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv9716	chr19:36840250-36851177	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv436255	chr19:36840422-36848264	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3318769	chr19:36844612-36849010	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3318770	chr19:36844612-36849010	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv579452	chr19:36845339-36848457	Strong transcription ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv579453	chr19:36845339-36848604	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv579459	chr19:36845537-36856379	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv579460	chr19:36846000-36850222	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv1795509	chr19:36847366-36852733	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36823800-36853600	ZNF genes & repeats	Liver	Liver
2	chr19:36827200-36862200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:36830600-36869400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:36832200-36849600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:36832200-36868600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:36832400-36851400	Weak transcription	Fetal Brain Male	brain
7	chr19:36832600-36849600	Weak transcription	Fetal Heart	heart
8	chr19:36832800-36849000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:36834000-36857400	Weak transcription	Brain Substantia Nigra	brain
10	chr19:36834200-36868800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr19:36834400-36849600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr19:36835800-36857200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:36835800-36868800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr19:36836400-36858400	Weak transcription	Osteobl	bone
15	chr19:36836400-36868000	Weak transcription	Psoas Muscle	Psoas
16	chr19:36836600-36849800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr19:36836600-36849800	Weak transcription	Colonic Mucosa	Colon
18	chr19:36836600-36857200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:36836600-36863400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr19:36836800-36849800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr19:36837000-36852600	Strong transcription	Fetal Stomach	stomach
22	chr19:36838000-36849600	Weak transcription	Small Intestine	intestine
23	chr19:36838000-36851200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr19:36838000-36851200	Weak transcription	HepG2	liver
25	chr19:36838000-36868600	Weak transcription	Stomach Mucosa	stomach
26	chr19:36838200-36849400	Weak transcription	Colon Smooth Muscle	Colon
27	chr19:36838200-36855000	Weak transcription	HSMM	muscle
28	chr19:36838600-36850400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr19:36839400-36849600	Weak transcription	Gastric	stomach
30	chr19:36839400-36851200	Weak transcription	HSMMtube	muscle
31	chr19:36839600-36849600	Weak transcription	Pancreas	Pancrea
32	chr19:36839800-36848400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr19:36839800-36849800	Weak transcription	Spleen	Spleen
34	chr19:36839800-36850600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr19:36839800-36851200	Weak transcription	Placenta	Placenta
36	chr19:36840000-36849600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr19:36840000-36849800	Weak transcription	Aorta	Aorta
38	chr19:36840000-36849800	Weak transcription	Esophagus	oesophagus
39	chr19:36840000-36855000	Weak transcription	Right Ventricle	heart
40	chr19:36840000-36856000	Weak transcription	Fetal Lung	lung
41	chr19:36841200-36854800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr19:36842400-36861200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr19:36842600-36851600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr19:36843600-36851000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr19:36844200-36849000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr19:36844200-36849400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr19:36844200-36849800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr19:36844200-36851000	Weak transcription	Fetal Kidney	kidney
49	chr19:36844200-36868800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr19:36844400-36848400	Weak transcription	Brain Cingulate Gyrus	brain

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