Variant report

Variant	rs3755713
Chromosome Location	chr3:81811224-81811225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:81797791..81799957-chr3:81809417..81811244,2	MCF-7	breast:
2	chr3:81789146..81795604-chr3:81809193..81811958,7	MCF-7	breast:
3	chr12:121733110..121736069-chr3:81809721..81812341,2	MCF-7	breast:
4	chr3:81810601..81811240-chr7:140178748..140179632,2	Hela-S3	cervix:
5	chr3:81776057..81778355-chr3:81808798..81811277,2	K562	blood:
6	chr3:81789819..81797196-chr3:81807650..81813820,9	K562	blood:

Variant related genes	Relation type
ENSG00000114480	Chromatin interaction
ENSG00000133606	Chromatin interaction
ENSG00000110931	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11127740	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs11127742	0.86[AFR][1000 genomes]
rs11707026	0.93[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs11711331	0.83[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs11712243	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11715625	0.89[AFR][1000 genomes]
rs11915042	0.85[EUR][1000 genomes]
rs13062741	0.95[CEU][hapmap];0.81[CHB][hapmap];0.80[EUR][1000 genomes]
rs13065281	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs13072957	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs13073613	0.91[CEU][hapmap];0.97[GIH][hapmap];0.85[MKK][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes]
rs13074632	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13079104	0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[GIH][hapmap];0.86[MKK][hapmap];0.81[TSI][hapmap]
rs13080520	0.91[CEU][hapmap];0.93[GIH][hapmap]
rs13083476	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13088000	0.85[EUR][1000 genomes]
rs13088603	0.81[AMR][1000 genomes]
rs13092157	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13099615	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs1464790	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17019299	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2053805	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs2229519	0.93[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.95[YRI][hapmap]
rs2290081	0.90[EUR][1000 genomes]
rs2691093	0.82[GIH][hapmap]
rs3772882	0.83[GIH][hapmap]
rs3772883	0.83[GIH][hapmap]
rs3772884	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3772891	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap]
rs3772896	0.86[CEU][hapmap]
rs3821548	0.87[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap]
rs3821551	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs3821552	0.95[CEU][hapmap];0.90[YRI][hapmap]
rs3849570	0.83[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap]
rs3849571	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs3943556	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs4411908	0.83[GIH][hapmap]
rs6548773	0.85[EUR][1000 genomes]
rs6792696	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6795133	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap]
rs6804587	0.88[AFR][1000 genomes]
rs7620240	0.87[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap]
rs7631052	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7634258	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs7642112	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap]
rs9817181	0.87[EUR][1000 genomes]
rs9826270	0.85[EUR][1000 genomes]
rs9842330	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1009607	chr3:81651419-81825151	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv536604	chr3:81651419-81825151	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv834749	chr3:81655377-81818880	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81805600-81811600	Active TSS	Right Ventricle	heart
2	chr3:81807800-81811600	Active TSS	Psoas Muscle	Psoas
3	chr3:81808000-81811400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:81808200-81811400	Active TSS	Right Atrium	heart
5	chr3:81808400-81811400	Active TSS	Left Ventricle	heart
6	chr3:81808800-81811400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:81808800-81811400	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr3:81808800-81811400	Active TSS	HSMM	muscle
9	chr3:81809000-81811800	Active TSS	Aorta	Aorta
10	chr3:81809400-81811400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:81809400-81811400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:81809600-81811400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr3:81809600-81811400	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr3:81809600-81811400	Active TSS	Fetal Brain Female	brain
15	chr3:81809600-81811800	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr3:81809800-81811400	Active TSS	H1 Cell Line	embryonic stem cell
17	chr3:81809800-81811400	Active TSS	Primary T cells fromperipheralblood	blood
18	chr3:81809800-81811400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:81809800-81811400	Active TSS	Fetal Muscle Trunk	muscle
20	chr3:81809800-81811600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr3:81809800-81811600	Active TSS	Fetal Stomach	stomach
22	chr3:81810000-81811400	Active TSS	H9 Cell Line	embryonic stem cell
23	chr3:81810000-81811400	Active TSS	Brain Anterior Caudate	brain
24	chr3:81810000-81811400	Active TSS	Fetal Lung	lung
25	chr3:81810000-81811600	Active TSS	Small Intestine	intestine
26	chr3:81810200-81811800	Active TSS	Fetal Kidney	kidney
27	chr3:81810800-81811400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
28	chr3:81810800-81811400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr3:81810800-81811400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr3:81810800-81811400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:81810800-81811400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:81810800-81811600	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr3:81810800-81811600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:81810800-81811800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:81810800-81811800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:81810800-81811800	Flanking Active TSS	Dnd41	blood
37	chr3:81811000-81811400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:81811000-81811400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:81811000-81811400	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr3:81811000-81811400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:81811000-81811400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr3:81811000-81811400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr3:81811000-81811400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr3:81811000-81811400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr3:81811000-81811400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr3:81811000-81811400	Flanking Active TSS	Liver	Liver
47	chr3:81811000-81811400	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr3:81811000-81811400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr3:81811000-81811400	Flanking Active TSS	Fetal Intestine Large	intestine
50	chr3:81811000-81811400	Flanking Active TSS	Fetal Intestine Small	intestine

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