Variant report

Variant	rs375687689
Chromosome Location	chr6:56328517-56328518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:56328378-56328522	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56326705..56328808-chr6:56330727..56334737,3	K562	blood:

Variant related genes	Relation type
DST	TF binding region
ENSG00000151914	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv885912	chr6:56327849-56458836	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56308800-56373800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:56315000-56347200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:56315000-56349800	Strong transcription	HSMM	muscle
4	chr6:56315600-56371000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:56315800-56329200	Weak transcription	Small Intestine	intestine
6	chr6:56316800-56337600	Weak transcription	Hela-S3	cervix
7	chr6:56317200-56342800	Strong transcription	Muscle Satellite Cultured Cells	--
8	chr6:56317800-56331200	Strong transcription	HSMMtube	muscle
9	chr6:56318000-56340600	Strong transcription	Fetal Intestine Large	intestine
10	chr6:56318600-56331000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:56318800-56332000	Strong transcription	Fetal Lung	lung
12	chr6:56319000-56331200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:56319000-56348200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:56319200-56331200	Strong transcription	Osteobl	bone
15	chr6:56319200-56340400	Strong transcription	NH-A	brain
16	chr6:56319200-56348400	Strong transcription	NHDF-Ad	bronchial
17	chr6:56319400-56329200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:56319400-56343600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:56319400-56344200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:56320000-56338800	Strong transcription	Liver	Liver
21	chr6:56320800-56328600	Strong transcription	Brain Substantia Nigra	brain
22	chr6:56320800-56331200	Strong transcription	Brain Anterior Caudate	brain
23	chr6:56321000-56331000	Strong transcription	Stomach Smooth Muscle	stomach
24	chr6:56321000-56331200	Strong transcription	Fetal Muscle Leg	muscle
25	chr6:56321000-56331200	Strong transcription	Left Ventricle	heart
26	chr6:56321000-56331800	Strong transcription	Brain Hippocampus Middle	brain
27	chr6:56321000-56343400	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:56321200-56343800	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:56321800-56331800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:56322000-56330000	Strong transcription	Brain Cingulate Gyrus	brain
31	chr6:56322000-56330800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr6:56322000-56331600	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:56322000-56332400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:56322200-56331400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:56322200-56332200	Strong transcription	GM12878-XiMat	blood
36	chr6:56322200-56339000	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:56322200-56349200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:56322400-56344200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:56322600-56348200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:56322800-56331000	Strong transcription	HepG2	liver
41	chr6:56323000-56331800	Strong transcription	HMEC	breast
42	chr6:56323600-56331200	Strong transcription	Colon Smooth Muscle	Colon
43	chr6:56324000-56333600	Weak transcription	Psoas Muscle	Psoas
44	chr6:56324200-56329200	Weak transcription	Esophagus	oesophagus
45	chr6:56324200-56331200	Strong transcription	Brain Angular Gyrus	brain
46	chr6:56324600-56331600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:56324800-56336800	Weak transcription	Gastric	stomach
48	chr6:56324800-56340400	Weak transcription	Spleen	Spleen
49	chr6:56325000-56340000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr6:56325000-56346600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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