Variant report

Variant	rs3756986
Chromosome Location	chr6:99375324-99375325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:99370838..99375904-chr6:99392057..99395964,5	K562	blood:
2	chr6:99373617..99378071-chr6:99378996..99382504,4	K562	blood:

Variant related genes	Relation type
ENSG00000112234	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12173555	0.83[AMR][1000 genomes]
rs1474606	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1884185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2016597	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2300062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2300063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388750	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2572095	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2572099	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2572109	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2747731	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2747733	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2747736	0.80[ASN][1000 genomes]
rs28488166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55923681	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67597785	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6924301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6928645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73503620	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73505759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7450561	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7742800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372960	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9372961	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9372982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9372983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9375807	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9385544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9388785	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9388899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9388909	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9402350	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604253	chr6:98857397-99630038	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1031376	chr6:99337783-99394171	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538386	chr6:99337783-99394171	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:99297000-99386000	Weak transcription	Fetal Brain Male	brain
2	chr6:99304600-99387200	Weak transcription	A549	lung
3	chr6:99309600-99383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:99309800-99377400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:99319400-99393600	Weak transcription	NHLF	lung
6	chr6:99320200-99379400	Weak transcription	NHEK	skin
7	chr6:99320400-99393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:99326000-99380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:99328800-99384800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:99335000-99376000	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:99345400-99381200	Weak transcription	Right Ventricle	heart
12	chr6:99347000-99376000	Weak transcription	Gastric	stomach
13	chr6:99347200-99377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:99347600-99392800	Weak transcription	Hela-S3	cervix
15	chr6:99348000-99377400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:99349400-99384400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:99349400-99392600	Weak transcription	Pancreas	Pancrea
18	chr6:99349600-99380200	Weak transcription	Brain Substantia Nigra	brain
19	chr6:99349800-99380400	Weak transcription	Fetal Lung	lung
20	chr6:99350600-99385600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:99353000-99380200	Weak transcription	HUVEC	blood vessel
22	chr6:99353400-99387200	Weak transcription	HMEC	breast
23	chr6:99353600-99377400	Weak transcription	Psoas Muscle	Psoas
24	chr6:99353600-99377600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:99353600-99382400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:99354000-99376200	Weak transcription	Placenta	Placenta
27	chr6:99354000-99389200	Weak transcription	HepG2	liver
28	chr6:99359000-99377400	Weak transcription	Aorta	Aorta
29	chr6:99359000-99379600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:99359400-99394600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:99367600-99381800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:99368400-99394800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:99369200-99381200	Weak transcription	Lung	lung
34	chr6:99369200-99383400	Weak transcription	Fetal Intestine Small	intestine
35	chr6:99369600-99380400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:99369600-99384800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:99370000-99381200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:99370600-99387200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:99370800-99375600	Strong transcription	Dnd41	blood
40	chr6:99371000-99377600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:99371600-99380400	Weak transcription	Fetal Intestine Large	intestine
42	chr6:99371600-99382600	Weak transcription	Esophagus	oesophagus
43	chr6:99372000-99394400	Weak transcription	NH-A	brain
44	chr6:99372200-99375600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:99372200-99380400	Weak transcription	Brain Anterior Caudate	brain
46	chr6:99372400-99376800	Enhancers	Fetal Heart	heart
47	chr6:99372400-99384800	Weak transcription	Spleen	Spleen
48	chr6:99372600-99376000	Weak transcription	Colonic Mucosa	Colon
49	chr6:99372600-99378200	Strong transcription	Primary T cells from cord blood	blood
50	chr6:99372600-99379600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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