Variant report

Variant	rs376039978
Chromosome Location	chr15:76630208-76630209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76601310..76610583-chr15:76618699..76634643,40	K562	blood:
2	chr15:76628671..76632944-chr15:76633969..76642252,10	MCF-7	breast:
3	chr10:75541358..75542179-chr15:76629650..76630534,2	NB4	blood:
4	chr15:76602419..76607116-chr15:76626572..76631104,6	MCF-7	breast:
5	chr15:76574110..76576498-chr15:76629872..76632197,2	K562	blood:
6	chr15:76601574..76614388-chr15:76623703..76634730,38	K562	blood:
7	chr15:76627980..76632315-chr15:76633215..76636196,5	MCF-7	breast:
8	chr15:76482689..76486583-chr15:76628039..76631365,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259514	Chromatin interaction
ENSG00000169758	Chromatin interaction
ENSG00000172586	Chromatin interaction
ENSG00000140374	Chromatin interaction
ENSG00000270036	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904399	chr15:76622903-76646575	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv827391	chr15:76626571-76636327	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3398970	chr15:76629522-76632070	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76627400-76635400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr15:76627600-76630400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
3	chr15:76627600-76630600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
4	chr15:76627600-76631000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr15:76627600-76631000	Bivalent Enhancer	Fetal Brain Male	brain
6	chr15:76627600-76631200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:76627600-76632400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
8	chr15:76627600-76634400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
9	chr15:76628000-76630600	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:76628000-76631800	Bivalent/Poised TSS	Fetal Stomach	stomach
11	chr15:76628000-76632000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
12	chr15:76628200-76630600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr15:76628200-76630800	Bivalent Enhancer	Liver	Liver
14	chr15:76628200-76631200	Active TSS	HSMM	muscle
15	chr15:76628400-76630400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:76628400-76630600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:76628600-76630600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:76628600-76630800	Active TSS	HSMMtube	muscle
19	chr15:76628800-76630400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:76628800-76630600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
21	chr15:76628800-76631200	Bivalent Enhancer	Fetal Heart	heart
22	chr15:76628800-76631200	Bivalent Enhancer	Fetal Lung	lung
23	chr15:76628800-76631200	Bivalent Enhancer	Lung	lung
24	chr15:76629000-76630400	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
25	chr15:76629000-76630400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
26	chr15:76629000-76630800	Bivalent/Poised TSS	Small Intestine	intestine
27	chr15:76629000-76631000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
28	chr15:76629000-76633600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
29	chr15:76629200-76630400	Bivalent Enhancer	Brain Germinal Matrix	brain
30	chr15:76629200-76630600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
31	chr15:76629200-76630600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr15:76629200-76631200	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr15:76629200-76631400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:76629200-76632200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:76629200-76632200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr15:76629200-76632600	Bivalent Enhancer	Fetal Thymus	thymus
37	chr15:76629400-76630400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr15:76629400-76630400	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
39	chr15:76629400-76630600	Bivalent Enhancer	Placenta	Placenta
40	chr15:76629400-76630600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
41	chr15:76629400-76631000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
42	chr15:76629400-76631000	Bivalent Enhancer	Brain Anterior Caudate	brain
43	chr15:76629400-76631200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:76629400-76631200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
45	chr15:76629400-76632000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
46	chr15:76629400-76633400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
47	chr15:76629600-76630400	Flanking Active TSS	Hela-S3	cervix
48	chr15:76629600-76630600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
49	chr15:76629600-76630600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:76629600-76630600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links