Variant report

Variant	rs3762277
Chromosome Location	chr1:93169283-93169284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93167180..93169532-chr1:93173013..93175472,3	K562	blood:
2	chr1:93168714..93171281-chr1:93175586..93177919,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1003209	1.00[CHB][hapmap]
rs10127800	1.00[CHB][hapmap]
rs10159031	1.00[CHB][hapmap]
rs12563400	1.00[CHB][hapmap]
rs12564911	1.00[CHB][hapmap]
rs12565259	1.00[CHB][hapmap]
rs1932965	1.00[JPT][hapmap]
rs7535171	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93120000-93171400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:93122800-93169400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:93123400-93176200	Weak transcription	Psoas Muscle	Psoas
5	chr1:93123600-93178800	Weak transcription	Aorta	Aorta
6	chr1:93123600-93213400	Weak transcription	Gastric	stomach
7	chr1:93142400-93171000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:93146600-93175600	Weak transcription	NHEK	skin
9	chr1:93148600-93171000	Weak transcription	Hela-S3	cervix
10	chr1:93153400-93170200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr1:93155800-93213400	Weak transcription	Lung	lung
12	chr1:93156200-93172800	Weak transcription	HepG2	liver
13	chr1:93156200-93174000	Weak transcription	A549	lung
14	chr1:93156800-93170800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:93157800-93171000	Weak transcription	Stomach Mucosa	stomach
16	chr1:93157800-93175600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:93158200-93169400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:93159000-93174800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:93160800-93170600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:93160800-93171000	Weak transcription	NH-A	brain
21	chr1:93160800-93174000	Weak transcription	Brain Angular Gyrus	brain
22	chr1:93160800-93175200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:93160800-93175200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:93160800-93175200	Weak transcription	HSMM	muscle
25	chr1:93160800-93177000	Weak transcription	Ovary	ovary
26	chr1:93161000-93170600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr1:93161000-93170800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:93161000-93170800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:93161000-93171000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr1:93161000-93171000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:93161000-93171000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr1:93161000-93171000	Weak transcription	Right Ventricle	heart
33	chr1:93161000-93171200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr1:93161000-93175200	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr1:93161000-93175600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:93161000-93176800	Weak transcription	Colon Smooth Muscle	Colon
37	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
38	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
40	chr1:93162200-93175400	Weak transcription	HSMMtube	muscle
41	chr1:93162400-93170800	Weak transcription	Fetal Intestine Small	intestine
42	chr1:93163800-93170400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:93163800-93170800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:93163800-93177400	Weak transcription	Placenta	Placenta
45	chr1:93163800-93190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:93164200-93175400	Weak transcription	Small Intestine	intestine
47	chr1:93167000-93171000	Weak transcription	Fetal Intestine Large	intestine
48	chr1:93167000-93174000	Weak transcription	Fetal Heart	heart
49	chr1:93167200-93170600	Weak transcription	K562	blood
50	chr1:93167200-93171000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links