Variant report

Variant	rs376335424
Chromosome Location	chr5:116790292-116790293
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:116790238-116790889	HCT-116	colon:	n/a	n/a
2	MAX	chr5:116790281-116790938	ECC-1	luminal epithelium:	n/a	n/a
3	RAD21	chr5:116790275-116790866	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTCF	chr5:116790287-116790882	MCF-7	breast:	n/a	n/a
5	CTCF	chr5:116790251-116790292	GM10248	blood:	n/a	n/a
6	CBX3	chr5:116790271-116791689	HCT-116	colon:	n/a	n/a
7	CTCF	chr5:116790232-116790914	A549	lung:	n/a	n/a
8	RAD21	chr5:116790273-116791787	SK-N-SH	brain:	n/a	n/a
9	SIN3AK20	chr5:116790235-116792128	MCF-7	breast:	n/a	n/a
10	GATA3	chr5:116790228-116791070	MCF-7	breast:	n/a	n/a
11	RAD21	chr5:116790231-116791013	MCF-7	breast:	n/a	n/a
12	CTCF	chr5:116790267-116790888	MCF-7	breast:	n/a	n/a
13	CTCF	chr5:116790279-116790318	GM10266	blood:	n/a	n/a
14	RAD21	chr5:116790269-116791008	ECC-1	luminal epithelium:	n/a	n/a
15	MAX	chr5:116790241-116791815	MCF-7	breast:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:116654194..116654786-chr5:116790174..116790911,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882756	chr5:116783660-116905052	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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