Variant report

Variant	rs376340772
Chromosome Location	chr2:182042605-182042606
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv961739	chr2:182041759-182049669	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182031800-182050400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr2:182032400-182048400	Weak transcription	Fetal Thymus	thymus
3	chr2:182035200-182042800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:182035200-182044800	Weak transcription	Dnd41	blood
5	chr2:182035200-182048800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:182038400-182043200	Enhancers	HSMMtube	muscle
7	chr2:182039600-182044000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr2:182040400-182042800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:182041000-182045200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:182041200-182043800	Enhancers	Primary T cells from cord blood	blood
11	chr2:182041400-182042800	Enhancers	HSMM	muscle
12	chr2:182041400-182043800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:182041400-182044000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:182041600-182043800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:182041600-182045200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr2:182041800-182043000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr2:182042400-182045000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr2:182042600-182042800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr2:182042600-182043800	Enhancers	GM12878-XiMat	blood
20	chr2:182042600-182044600	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links