Variant report

Variant	rs3766345
Chromosome Location	chr1:78990275-78990276
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs3766344	0.88[CEU][hapmap]
rs473027	0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs501078	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs530871	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs538275	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs552328	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs554185	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs589958	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs590309	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs668005	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs686262	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3766345	SRD5A1	trans	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78977600-78993200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:78988800-78995800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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