Variant report

Variant	rs3767255
Chromosome Location	chr1:215781574-215781575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215740423..215743383-chr1:215780282..215782338,2	K562	blood:
2	chr1:215775780..215777459-chr1:215779441..215782060,2	K562	blood:

Variant related genes	Relation type
ENSG00000136636	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10864179	0.80[EUR][1000 genomes]
rs11120592	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1124524	0.85[EUR][1000 genomes]
rs11803705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17024879	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs17025030	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1876406	0.80[EUR][1000 genomes]
rs2275768	0.84[EUR][1000 genomes]
rs2797389	0.90[CEU][hapmap];0.87[CHB][hapmap];0.87[EUR][1000 genomes]
rs4655284	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4655413	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs61830033	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7528121	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215741800-215786200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:215741800-215809800	Weak transcription	Colonic Mucosa	Colon
3	chr1:215742000-215786400	Weak transcription	Thymus	Thymus
4	chr1:215742200-215786400	Weak transcription	Primary T cells from cord blood	blood
5	chr1:215743200-215785800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:215750000-215786200	Weak transcription	Small Intestine	intestine
7	chr1:215750000-215805000	Weak transcription	Lung	lung
8	chr1:215750200-215785800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:215750200-215786200	Weak transcription	Pancreas	Pancrea
10	chr1:215750200-215790400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:215750200-215795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:215750200-215796000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:215750200-215804400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:215750200-215809200	Weak transcription	Gastric	stomach
15	chr1:215753200-215792200	Weak transcription	Aorta	Aorta
16	chr1:215755800-215804800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:215757000-215782600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:215760400-215786200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr1:215765200-215790400	Weak transcription	Esophagus	oesophagus
20	chr1:215766400-215786200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:215768000-215791800	Weak transcription	Fetal Brain Male	brain
22	chr1:215768400-215790600	Weak transcription	Right Ventricle	heart
23	chr1:215770600-215785000	Weak transcription	Fetal Brain Female	brain
24	chr1:215771200-215782000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr1:215771200-215786200	Weak transcription	HSMMtube	muscle
26	chr1:215773000-215790400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:215773200-215781800	Weak transcription	Brain Germinal Matrix	brain
28	chr1:215773200-215782000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr1:215773200-215782600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:215773200-215785800	Weak transcription	Primary B cells from cord blood	blood
31	chr1:215773400-215786200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:215773600-215785400	Weak transcription	Brain Anterior Caudate	brain
33	chr1:215773600-215786200	Weak transcription	Fetal Intestine Small	intestine
34	chr1:215773600-215792400	Weak transcription	Brain Angular Gyrus	brain
35	chr1:215773800-215798600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:215774000-215785400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr1:215774000-215795200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr1:215775000-215786200	Weak transcription	Fetal Stomach	stomach
39	chr1:215776000-215784000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr1:215777200-215792200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:215777800-215782000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr1:215777800-215782200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:215778000-215782000	Weak transcription	Fetal Muscle Leg	muscle
44	chr1:215778800-215781800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr1:215778800-215782200	Enhancers	Liver	Liver
46	chr1:215778800-215785200	Weak transcription	Brain Hippocampus Middle	brain
47	chr1:215778800-215791600	Weak transcription	Brain Substantia Nigra	brain
48	chr1:215779000-215781800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:215779000-215782000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr1:215779200-215781800	Weak transcription	Left Ventricle	heart

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