Variant report

Variant	rs3767320
Chromosome Location	chr1:220773634-220773635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10495149	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10746403	0.89[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10779412	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10779413	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10779414	0.95[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10863561	0.83[ASN][1000 genomes]
rs11118567	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11118570	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11118573	0.94[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11118576	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118579	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118584	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11118588	0.83[ASN][1000 genomes]
rs11588721	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1193032	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12044432	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12126252	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12408540	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs12735691	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1933001	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2095669	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2152836	0.94[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2244448	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2378400	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2589581	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2589586	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2589589	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.80[ASN][1000 genomes]
rs2786598	0.80[EUR][1000 genomes]
rs2786606	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2786610	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs2786617	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2889895	0.89[ASW][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];0.95[YRI][hapmap];0.85[ASN][1000 genomes]
rs3753873	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs3753874	0.88[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.81[LWK][hapmap];0.85[YRI][hapmap]
rs3767319	1.00[ASW][hapmap];0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs3767321	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3767323	0.94[ASW][hapmap];0.95[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3820347	0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3899315	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs3905814	0.82[ASN][1000 genomes]
rs4338357	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4846326	0.94[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4846327	0.81[ASN][1000 genomes]
rs4846655	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6541154	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6675368	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6695583	0.89[ASW][hapmap];0.90[CEU][hapmap];0.82[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9430949	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
2	chr1:220751800-220799000	Weak transcription	Fetal Stomach	stomach
3	chr1:220752400-220775000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:220752600-220808600	Weak transcription	Left Ventricle	heart
5	chr1:220753400-220778400	Weak transcription	NHEK	skin
6	chr1:220756000-220790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr1:220756600-220775000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:220761200-220799200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:220762600-220780200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:220764200-220790200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:220764400-220779200	Weak transcription	Fetal Heart	heart
12	chr1:220767400-220798600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:220767600-220799000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:220767800-220784400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:220767800-220826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:220768000-220775000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:220768000-220790800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:220768000-220804600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:220768000-220813800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:220768200-220778200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:220768200-220784200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:220768200-220791600	Weak transcription	Brain Germinal Matrix	brain
23	chr1:220768400-220799000	Weak transcription	Adipose Nuclei	Adipose
24	chr1:220768800-220775000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:220768800-220784400	Weak transcription	Fetal Brain Female	brain
26	chr1:220769600-220775000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:220773200-220774000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:220773400-220784600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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