Variant report

Variant	rs376790617
Chromosome Location	chr15:58520542-58520543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58513464..58515183-chr15:58519032..58521453,2	K562	blood:
2	chr15:58520038..58520592-chr15:59249453..59250225,3	K562	blood:
3	chr15:58519681..58521503-chr15:59041156..59042988,2	MCF-7	breast:
4	chr15:58518907..58522119-chr15:58624457..58627687,4	K562	blood:
5	chr15:58518773..58521484-chr15:59062953..59065044,2	MCF-7	breast:
6	chr15:58519770..58521503-chr15:58715577..58717727,2	K562	blood:
7	chr15:58520072..58520665-chr15:59050085..59050929,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245975	Chromatin interaction
ENSG00000137845	Chromatin interaction
ENSG00000128923	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58515400-58520800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:58516600-58520600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr15:58516600-58520600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:58516600-58520600	Weak transcription	Spleen	Spleen
5	chr15:58516600-58520600	Weak transcription	Osteobl	bone
6	chr15:58516600-58520800	Weak transcription	Fetal Lung	lung
7	chr15:58516600-58520800	Weak transcription	Fetal Stomach	stomach
8	chr15:58516600-58521000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:58516800-58520600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:58516800-58520600	Weak transcription	Brain Angular Gyrus	brain
11	chr15:58516800-58520600	Weak transcription	Brain Anterior Caudate	brain
12	chr15:58516800-58521000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:58517000-58520600	Weak transcription	Brain Substantia Nigra	brain
14	chr15:58517000-58520800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:58517000-58520800	Weak transcription	Adipose Nuclei	Adipose
16	chr15:58518800-58520800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:58519200-58520800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:58519200-58522600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:58519800-58521200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:58520000-58521000	Enhancers	Fetal Heart	heart
21	chr15:58520000-58521200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:58520200-58520600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr15:58520200-58520600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr15:58520200-58520800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr15:58520200-58520800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr15:58520200-58520800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr15:58520200-58520800	Enhancers	A549	lung
28	chr15:58520200-58521200	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr15:58520200-58521200	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr15:58520200-58521400	Enhancers	Liver	Liver
31	chr15:58520200-58521400	Enhancers	Hela-S3	cervix
32	chr15:58520200-58522200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:58520200-58522200	Enhancers	NHDF-Ad	bronchial
34	chr15:58520200-58522400	Enhancers	Primary T cells from cord blood	blood
35	chr15:58520200-58522600	Enhancers	HSMMtube	muscle
36	chr15:58520200-58523400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:58520200-58523400	Enhancers	NHEK	skin
38	chr15:58520400-58520800	Enhancers	NH-A	brain
39	chr15:58520400-58521000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
40	chr15:58520400-58521200	Enhancers	H1 Cell Line	embryonic stem cell
41	chr15:58520400-58521200	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr15:58520400-58521200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:58520400-58521200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:58520400-58521400	Enhancers	H9 Cell Line	embryonic stem cell
45	chr15:58520400-58521400	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr15:58520400-58521600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:58520400-58521600	Enhancers	Brain Cingulate Gyrus	brain
48	chr15:58520400-58521600	Enhancers	Thymus	Thymus
49	chr15:58520400-58521800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:58520400-58522000	Enhancers	Primary T helper cells PMA-I stimulated	--

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