Variant report

Variant	rs3768827
Chromosome Location	chr2:210535419-210535420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10165558	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10169017	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10172200	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10183590	0.96[ASN][1000 genomes]
rs10183604	0.96[ASN][1000 genomes]
rs10189911	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10193321	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10196314	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10196600	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10206817	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10490021	0.96[ASN][1000 genomes]
rs10804176	0.96[ASN][1000 genomes]
rs10932305	0.96[ASN][1000 genomes]
rs11677975	0.96[ASN][1000 genomes]
rs11682692	0.96[ASN][1000 genomes]
rs11687043	0.93[ASN][1000 genomes]
rs11691800	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11691894	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11692075	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11692345	0.93[ASN][1000 genomes]
rs12613705	0.96[ASN][1000 genomes]
rs12614031	0.96[ASN][1000 genomes]
rs12616589	0.82[ASN][1000 genomes]
rs12618080	0.98[ASN][1000 genomes]
rs12619253	0.96[ASN][1000 genomes]
rs12619409	0.96[ASN][1000 genomes]
rs13385585	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13409134	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13422521	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423127	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1509468	0.89[ASN][1000 genomes]
rs1509469	0.83[ASN][1000 genomes]
rs1509470	0.82[ASN][1000 genomes]
rs16843329	0.82[ASN][1000 genomes]
rs16843351	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16843354	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16843360	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16843382	0.98[ASN][1000 genomes]
rs16843421	1.00[ASN][1000 genomes]
rs16843453	0.96[ASN][1000 genomes]
rs16843515	0.96[ASN][1000 genomes]
rs16843544	0.96[ASN][1000 genomes]
rs16843614	0.96[ASN][1000 genomes]
rs16843618	0.96[ASN][1000 genomes]
rs16843626	0.96[ASN][1000 genomes]
rs16843651	0.96[ASN][1000 genomes]
rs2191910	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2215624	0.96[ASN][1000 genomes]
rs2215625	0.86[ASN][1000 genomes]
rs2239552	0.96[ASN][1000 genomes]
rs2239553	0.96[ASN][1000 genomes]
rs2239672	0.96[ASN][1000 genomes]
rs2268042	0.96[ASN][1000 genomes]
rs2268044	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2268045	0.96[ASN][1000 genomes]
rs2271252	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2284359	0.96[ASN][1000 genomes]
rs2284360	0.96[ASN][1000 genomes]
rs2286849	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286850	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2300154	0.96[ASN][1000 genomes]
rs2663647	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2663649	0.82[ASN][1000 genomes]
rs2663651	0.82[ASN][1000 genomes]
rs2663653	0.82[ASN][1000 genomes]
rs2663658	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2710479	0.81[ASN][1000 genomes]
rs2710480	0.88[ASN][1000 genomes]
rs2710482	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28435689	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28666486	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28758270	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3738935	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3754597	0.96[ASN][1000 genomes]
rs3768810	0.96[ASN][1000 genomes]
rs3768811	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768813	0.96[ASN][1000 genomes]
rs3768814	0.96[ASN][1000 genomes]
rs3768815	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3768816	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768820	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768821	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3768823	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3768826	0.98[ASN][1000 genomes]
rs3768828	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768830	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768832	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768833	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768834	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768835	0.98[ASN][1000 genomes]
rs3820746	0.96[ASN][1000 genomes]
rs3820748	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3886931	0.96[ASN][1000 genomes]
rs4673486	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56659802	0.93[ASN][1000 genomes]
rs56825045	0.96[ASN][1000 genomes]
rs57542539	0.96[ASN][1000 genomes]
rs57853945	0.96[ASN][1000 genomes]
rs58295121	0.94[ASN][1000 genomes]
rs58525719	0.96[ASN][1000 genomes]
rs58779755	0.91[ASN][1000 genomes]
rs59155421	0.98[ASN][1000 genomes]
rs59555743	0.96[ASN][1000 genomes]
rs60138527	0.82[ASN][1000 genomes]
rs61333809	0.96[ASN][1000 genomes]
rs61420319	0.96[ASN][1000 genomes]
rs6709925	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6717554	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6720659	0.96[ASN][1000 genomes]
rs6724834	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6746029	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs741006	0.96[ASN][1000 genomes]
rs741007	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7567257	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594601	0.96[ASN][1000 genomes]
rs7596811	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs962475	0.82[ASN][1000 genomes]
rs994862	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210518200-210543200	Weak transcription	Aorta	Aorta
2	chr2:210528600-210550200	Weak transcription	Brain Substantia Nigra	brain
3	chr2:210528800-210550200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:210530400-210536000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:210531400-210535800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:210531400-210587800	Weak transcription	Brain Angular Gyrus	brain
7	chr2:210532400-210537000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:210532800-210535600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:210532800-210536000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:210533800-210537600	Enhancers	Fetal Brain Male	brain
11	chr2:210534600-210535800	Weak transcription	Brain Anterior Caudate	brain
12	chr2:210534600-210535800	Enhancers	Brain Germinal Matrix	brain
13	chr2:210535000-210536400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:210535000-210536600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:210535000-210537000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:210535400-210536000	Enhancers	Fetal Brain Female	brain
17	chr2:210535400-210537000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:210535400-210537000	Enhancers	Brain Hippocampus Middle	brain

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