Variant report

Variant	rs3770749
Chromosome Location	chr2:37584705-37584706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr2:37584172-37584728	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr2:37584154-37584732	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37582825..37585072-chr2:37588211..37589764,2	MCF-7	breast:

Variant related genes	Relation type
QPCT	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10189564	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12468307	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12472984	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13429526	0.83[JPT][hapmap]
rs17020358	0.84[JPT][hapmap]
rs2041838	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2255991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2302651	0.81[JPT][hapmap]
rs3755192	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs3815555	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3891003	0.88[YRI][hapmap]
rs4384764	0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4670187	1.00[CEU][hapmap]
rs4670196	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4670684	0.85[CHB][hapmap]
rs6733943	0.88[YRI][hapmap]
rs7593932	0.90[CHB][hapmap]
rs952711	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs952712	0.95[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37572600-37595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:37577000-37590600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
4	chr2:37577600-37588600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:37577800-37589000	Weak transcription	Left Ventricle	heart
6	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:37578600-37601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:37578800-37602200	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:37579800-37592600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr2:37579800-37603000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr2:37580200-37603400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:37581600-37595600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:37581800-37588400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:37583600-37607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:37583800-37588600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:37584200-37585600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:37584600-37585000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr2:37584600-37585000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr2:37584600-37585000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr2:37584600-37585000	Enhancers	Adipose Nuclei	Adipose
22	chr2:37584600-37585000	Enhancers	Duodenum Mucosa	Duodenum
23	chr2:37584600-37585000	Flanking Active TSS	NHDF-Ad	bronchial
24	chr2:37584600-37585200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:37584600-37585800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:37584600-37586000	Enhancers	Osteobl	bone

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