Variant report

Variant	rs3770752
Chromosome Location	chr2:37576136-37576137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37573383..37576359-chr2:37576591..37578098,2	K562	blood:
2	chr2:37574642..37576209-chr2:37580099..37581679,2	K562	blood:
3	chr2:37571184..37574506-chr2:37575236..37577117,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115828	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10177176	0.92[CEU][hapmap]
rs10182759	0.83[CEU][hapmap]
rs10184179	0.92[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs10190959	0.96[CEU][hapmap]
rs10209937	0.88[CEU][hapmap]
rs10490448	1.00[LWK][hapmap]
rs11124569	0.92[CEU][hapmap]
rs11124574	0.88[CEU][hapmap]
rs1137437	0.88[CEU][hapmap]
rs1158218	0.96[CEU][hapmap]
rs1158219	0.96[CEU][hapmap]
rs12618410	0.92[CEU][hapmap]
rs17020624	1.00[LWK][hapmap]
rs2041836	0.96[CEU][hapmap]
rs2287093	0.88[CEU][hapmap]
rs2888434	0.92[CEU][hapmap]
rs3213745	0.92[CEU][hapmap]
rs3755195	0.92[CEU][hapmap]
rs3770754	1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.86[AMR][1000 genomes]
rs3770759	0.92[CEU][hapmap]
rs3891003	0.86[JPT][hapmap]
rs4998429	0.92[CEU][hapmap]
rs6743782	0.84[CEU][hapmap]
rs876462	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs9309004	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3770752	CEBPZ	cis	lymphoblastoid	seeQTL
rs3770752	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs3770752	CEBPZ	cis	cerebellum	SCAN

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37572400-37576200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:37572400-37576600	Weak transcription	Spleen	Spleen
3	chr2:37572600-37576600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:37572600-37576600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:37572600-37576600	Weak transcription	Fetal Kidney	kidney
6	chr2:37572600-37576600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr2:37572600-37576800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:37572600-37576800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:37572600-37577200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:37572600-37577200	Weak transcription	Liver	Liver
11	chr2:37572600-37577200	Weak transcription	Fetal Intestine Large	intestine
12	chr2:37572600-37577200	Weak transcription	Left Ventricle	heart
13	chr2:37572600-37595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr2:37572800-37576200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:37572800-37576800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr2:37572800-37576800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:37572800-37577200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:37572800-37577200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:37572800-37577200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr2:37572800-37577200	Weak transcription	Right Atrium	heart
21	chr2:37572800-37577200	Weak transcription	HMEC	breast
22	chr2:37572800-37577200	Weak transcription	Osteobl	bone
23	chr2:37572800-37577600	Weak transcription	NHEK	skin
24	chr2:37573200-37577000	Weak transcription	Adipose Nuclei	Adipose
25	chr2:37573400-37576400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:37573400-37576600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr2:37573400-37577600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr2:37573600-37578800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr2:37575000-37578600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr2:37575200-37576200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr2:37575200-37577000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:37575200-37577400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr2:37575200-37577400	Enhancers	HSMMtube	muscle
34	chr2:37575200-37577600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr2:37575200-37577800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr2:37575200-37578400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:37575200-37578600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr2:37575400-37577200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr2:37575400-37577800	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr2:37575600-37576400	Enhancers	Brain Germinal Matrix	brain
41	chr2:37575600-37576400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr2:37575600-37577200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr2:37575600-37577600	Enhancers	H1 Cell Line	embryonic stem cell
44	chr2:37575600-37578000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr2:37575800-37576200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr2:37575800-37576200	Enhancers	Primary B cells from cord blood	blood
47	chr2:37575800-37576200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr2:37575800-37576400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:37575800-37576800	Enhancers	H9 Cell Line	embryonic stem cell
50	chr2:37575800-37576800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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