Variant report

Variant	rs3774467
Chromosome Location	chr3:53628985-53628986
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17053233	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17053285	0.84[CHB][hapmap]
rs17053295	0.84[CHB][hapmap]
rs2292918	0.84[CHB][hapmap]
rs2680657	0.82[CHB][hapmap]
rs3774459	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3774485	0.83[CHB][hapmap]
rs3774513	0.84[CHB][hapmap]
rs60385590	0.94[ASN][1000 genomes]
rs6788419	0.82[CHB][hapmap]
rs715781	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs73840122	0.98[ASN][1000 genomes]
rs898412	0.84[CHB][hapmap]
rs898413	0.82[CHB][hapmap]
rs898414	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
2	chr3:53619400-53630800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:53623200-53631800	Strong transcription	Fetal Intestine Small	intestine
4	chr3:53623600-53637200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:53623800-53631000	Strong transcription	Fetal Intestine Large	intestine
6	chr3:53626600-53631800	Weak transcription	Fetal Lung	lung
7	chr3:53627800-53630200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:53628200-53632600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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