Variant report

Variant	rs3774482
Chromosome Location	chr3:53658995-53658996
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13063116	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs34848605	0.93[EUR][1000 genomes]
rs3774477	0.95[EUR][1000 genomes]
rs3774487	0.87[CEU][hapmap]
rs3774490	0.87[CEU][hapmap]
rs3774503	0.87[CEU][hapmap]
rs3774522	0.84[EUR][1000 genomes]
rs6786894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71301842	0.93[EUR][1000 genomes]
rs71301843	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:53657600-53659000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:53657800-53659400	Enhancers	Placenta	Placenta
5	chr3:53657800-53661400	Strong transcription	Fetal Intestine Large	intestine
6	chr3:53658400-53659000	Enhancers	Fetal Brain Male	brain
7	chr3:53658400-53659200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:53658400-53659600	Enhancers	Lung	lung
9	chr3:53658600-53659000	Enhancers	Fetal Lung	lung
10	chr3:53658600-53659200	Weak transcription	Fetal Kidney	kidney
11	chr3:53658600-53659400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:53658600-53659400	Weak transcription	Pancreas	Pancrea
13	chr3:53658600-53659600	Enhancers	Fetal Brain Female	brain
14	chr3:53658600-53660200	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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