Variant report

Variant	rs3774484
Chromosome Location	chr3:53659263-53659264
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17053285	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17053295	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292918	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2612020	0.95[ASN][1000 genomes]
rs2633708	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2633709	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2680657	0.95[ASN][1000 genomes]
rs2680659	0.95[ASN][1000 genomes]
rs36003262	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774459	1.00[EUR][1000 genomes]
rs3774485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774499	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774500	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774521	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3774524	0.86[ASN][1000 genomes]
rs55999888	0.93[ASN][1000 genomes]
rs6788419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs715781	1.00[EUR][1000 genomes]
rs72967859	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72978531	0.95[ASN][1000 genomes]
rs73840122	1.00[EUR][1000 genomes]
rs898412	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs898413	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs898414	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9311511	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9848595	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:53657800-53659400	Enhancers	Placenta	Placenta
4	chr3:53657800-53661400	Strong transcription	Fetal Intestine Large	intestine
5	chr3:53658400-53659600	Enhancers	Lung	lung
6	chr3:53658600-53659400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:53658600-53659400	Weak transcription	Pancreas	Pancrea
8	chr3:53658600-53659600	Enhancers	Fetal Brain Female	brain
9	chr3:53658600-53660200	Enhancers	Brain Germinal Matrix	brain
10	chr3:53659000-53660400	Weak transcription	Fetal Lung	lung
11	chr3:53659000-53662400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:53659000-53662800	Weak transcription	Fetal Brain Male	brain
13	chr3:53659200-53659400	Enhancers	Fetal Kidney	kidney
14	chr3:53659200-53663400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links