Variant report

Variant	rs3774591
Chromosome Location	chr3:53818052-53818053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11707420	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1829423	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2278516	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2278518	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2612027	0.81[EUR][1000 genomes]
rs2680650	0.84[EUR][1000 genomes]
rs3774572	0.83[EUR][1000 genomes]
rs3774589	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821865	0.91[EUR][1000 genomes]
rs4687740	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7617553	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9881910	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53802400-53818200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:53807400-53819200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:53807600-53829800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:53808200-53818400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:53808200-53827800	Strong transcription	Fetal Intestine Small	intestine
6	chr3:53808800-53830200	Weak transcription	Pancreas	Pancrea
7	chr3:53809400-53824400	Strong transcription	Fetal Intestine Large	intestine
8	chr3:53811400-53838600	Weak transcription	Spleen	Spleen
9	chr3:53811600-53843600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr3:53813400-53821400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:53815200-53829000	Weak transcription	Brain Anterior Caudate	brain
12	chr3:53815200-53829400	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:53815400-53829800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:53816600-53818200	Strong transcription	Lung	lung
15	chr3:53816600-53822800	Strong transcription	Fetal Lung	lung
16	chr3:53818000-53818200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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