Variant report

Variant	rs377471
Chromosome Location	chr14:56540700-56540701
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs241549	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs3186565	0.82[JPT][hapmap]
rs374338	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs377072	0.91[JPT][hapmap]
rs3850295	0.82[JPT][hapmap]
rs387419	0.91[JPT][hapmap]
rs395470	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004543	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56539400-56541000	Enhancers	Ovary	ovary
2	chr14:56539800-56541800	Enhancers	Fetal Stomach	stomach
3	chr14:56540000-56540800	Enhancers	Fetal Muscle Leg	muscle
4	chr14:56540000-56541200	Enhancers	Fetal Lung	lung
5	chr14:56540600-56540800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:56540600-56540800	Enhancers	Stomach Smooth Muscle	stomach
7	chr14:56540600-56541000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr14:56540600-56541000	Enhancers	Gastric	stomach
9	chr14:56540600-56541200	Enhancers	Lung	lung
10	chr14:56540600-56541200	Enhancers	Pancreas	Pancrea
11	chr14:56540600-56541200	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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