Variant report

Variant	rs377487822
Chromosome Location	chr13:51795859-51795860
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr13:51795763-51795934	MCF10A-Er-Src	breast:	n/a	n/a
2	NRF1	chr13:51795775-51796758	SK-N-SH	brain:	n/a	chr13:51796174-51796183
3	MAX	chr13:51795812-51796692	A549	lung:	n/a	chr13:51796175-51796185
4	CTCF	chr13:51795851-51797362	A549	lung:	n/a	chr13:51797054-51797072 chr13:51796882-51796891
5	REST	chr13:51795797-51796692	H1-neurons	neurons:	n/a	n/a
6	MAX	chr13:51795854-51796588	HCT-116	colon:	n/a	chr13:51796175-51796185
7	MYC	chr13:51795778-51796333	MCF10A-Er-Src	breast:	n/a	chr13:51796175-51796185

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERPINE3-4	chr13:51795151-51798286	ncRnaDb_ncrna_FR376720_3

Variant related genes	Relation type
FAM124A	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3332869	chr13:51795701-51797799	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51795200-51796000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
2	chr13:51795400-51796000	Bivalent Enhancer	Fetal Thymus	thymus
3	chr13:51795400-51796200	Bivalent Enhancer	Stomach Mucosa	stomach
4	chr13:51795600-51796000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
5	chr13:51795600-51796000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr13:51795600-51796000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
7	chr13:51795600-51796000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
8	chr13:51795600-51796000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:51795600-51796000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:51795600-51796000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:51795600-51796000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr13:51795600-51796000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:51795600-51796000	Bivalent Enhancer	Fetal Lung	lung
14	chr13:51795600-51796000	Enhancers	Pancreas	Pancrea
15	chr13:51795600-51796000	Enhancers	Rectal Smooth Muscle	rectum
16	chr13:51795600-51796200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
17	chr13:51795600-51796200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:51795600-51796200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
19	chr13:51795600-51796200	Active TSS	Esophagus	oesophagus
20	chr13:51795600-51796400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:51795600-51797200	Active TSS	A549	lung
22	chr13:51795800-51796000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr13:51795800-51796000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr13:51795800-51796000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr13:51795800-51796000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:51795800-51796000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr13:51795800-51796000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr13:51795800-51796000	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr13:51795800-51796000	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr13:51795800-51796000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
31	chr13:51795800-51796000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr13:51795800-51796000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
33	chr13:51795800-51796000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr13:51795800-51796000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr13:51795800-51796000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
36	chr13:51795800-51796000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr13:51795800-51796000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:51795800-51796000	Enhancers	Liver	Liver
39	chr13:51795800-51796000	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr13:51795800-51796000	Active TSS	Duodenum Mucosa	Duodenum
41	chr13:51795800-51796000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
42	chr13:51795800-51796000	Flanking Active TSS	Fetal Heart	heart
43	chr13:51795800-51796000	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
44	chr13:51795800-51796000	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
45	chr13:51795800-51796000	Bivalent Enhancer	Placenta	Placenta
46	chr13:51795800-51796000	Bivalent Enhancer	Fetal Stomach	stomach
47	chr13:51795800-51796000	Active TSS	Ovary	ovary
48	chr13:51795800-51796200	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
49	chr13:51795800-51796200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
50	chr13:51795800-51796200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood

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