Variant report

Variant	rs377693149
Chromosome Location	chr6:12967704-12967705
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12966482..12969474-chr6:12970571..12972855,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	esv3349672	chr6:12967586-12967810	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12959200-12968000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:12961000-12968400	Weak transcription	Brain Substantia Nigra	brain
3	chr6:12962800-12968000	Weak transcription	Brain Angular Gyrus	brain
4	chr6:12963200-12967800	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:12963400-12967800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:12963600-12969400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:12963600-12971000	Weak transcription	HSMM	muscle
8	chr6:12963600-12971600	Weak transcription	Spleen	Spleen
9	chr6:12963600-12972400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:12963600-12973000	Weak transcription	Pancreas	Pancrea
11	chr6:12963600-12974600	Weak transcription	Right Ventricle	heart
12	chr6:12964000-12967800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:12964000-12968200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:12964000-12968200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr6:12964000-12971400	Enhancers	Fetal Heart	heart
16	chr6:12964000-12988000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:12964200-12968000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:12964200-12968000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:12964200-12968400	Weak transcription	Fetal Lung	lung
20	chr6:12964800-12968000	Weak transcription	Brain Anterior Caudate	brain
21	chr6:12964800-12968200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:12964800-12969400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:12965200-12967800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:12965200-12968200	Weak transcription	Aorta	Aorta
25	chr6:12965200-12971000	Weak transcription	HUVEC	blood vessel
26	chr6:12966000-12968800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:12966200-12968000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:12966200-12968200	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:12966600-12967800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:12966600-12972800	Weak transcription	Lung	lung
31	chr6:12966800-12975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:12967200-12967800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:12967400-12968400	Enhancers	Left Ventricle	heart
34	chr6:12967400-12968800	Enhancers	Fetal Muscle Leg	muscle
35	chr6:12967600-12968000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:12967600-12968200	Enhancers	NHDF-Ad	bronchial

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