Variant report

Variant	rs377706184
Chromosome Location	chr11:47430641-47430642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:47430632-47431107	HepG2	liver:	n/a	n/a
2	MAX	chr11:47430563-47430987	Hela-S3	cervix:	n/a	n/a
3	MAZ	chr11:47428435-47431694	IMR90	lung:	n/a	chr11:47430013-47430023 chr11:47428706-47428716
4	TAF1	chr11:47430407-47430932	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr11:47430517-47430880	U87	brain:	n/a	n/a
6	POLR2A	chr11:47429424-47431688	IMR90	lung:	n/a	n/a
7	MAZ	chr11:47428995-47431051	Hela-S3	cervix:	n/a	chr11:47430013-47430023
8	HCFC1	chr11:47428525-47432352	Hela-S3	cervix:	n/a	n/a
9	EP300	chr11:47429381-47431040	SK-N-SH	brain:	n/a	chr11:47430234-47430243 chr11:47430826-47430842 chr11:47430309-47430325 chr11:47430623-47430639 chr11:47430200-47430209 chr11:47429639-47429655 chr11:47429853-47429869 chr11:47430197-47430206 chr11:47430194-47430203
10	FOS	chr11:47430599-47430943	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr11:47429454-47431598	ProgFib	skin:	n/a	n/a
12	POLR2A	chr11:47429033-47431014	Hela-S3	cervix:	n/a	n/a
13	CTCF	chr11:47429062-47431721	SK-N-SH	brain:	n/a	chr11:47430629-47430642 chr11:47431524-47431537 chr11:47429638-47429651
14	POLR2A	chr11:47429342-47431128	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr11:47428894-47431242	HepG2	liver:	n/a	n/a
16	MYC	chr11:47430560-47430961	HUVEC	blood vessel:	n/a	n/a
17	POLR2A	chr11:47429370-47430843	Hela-S3	cervix:	n/a	n/a
18	MYC	chr11:47430598-47430958	MCF10A-Er-Src	breast:	n/a	n/a
19	POLR2A	chr11:47429344-47431080	PFSK-1	brain:	n/a	n/a
20	SIN3AK20	chr11:47430631-47430811	SK-N-SH	brain:	n/a	n/a
21	TFAP2A	chr11:47429542-47431562	Hela-S3	cervix:	n/a	chr11:47430241-47430253 chr11:47430244-47430252 chr11:47431384-47431398 chr11:47431386-47431396 chr11:47430244-47430252 chr11:47431386-47431396 chr11:47431384-47431398 chr11:47431386-47431396 chr11:47431386-47431401 chr11:47431384-47431398 chr11:47431386-47431396 chr11:47430838-47430848 chr11:47430244-47430252
22	MXI1	chr11:47429542-47431013	HepG2	liver:	n/a	n/a
23	GTF2F1	chr11:47430612-47430708	H1-hESC	embryonic stem cell:	n/a	n/a
24	SMARCB1	chr11:47428926-47430979	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr11:47429230-47431154	U87	brain:	n/a	n/a
26	POLR2A	chr11:47428847-47431024	H1-hESC	embryonic stem cell:	n/a	n/a
27	CHD2	chr11:47430632-47430941	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr11:47430512-47431017	HUVEC	blood vessel:	n/a	n/a
29	UBTF	chr11:47430592-47430648	K562	blood:	n/a	n/a
30	TAF1	chr11:47430522-47430915	SK-N-SH	brain:	n/a	n/a
31	POLR2A	chr11:47428805-47431204	HUVEC	blood vessel:	n/a	n/a
32	RAD21	chr11:47430635-47430956	IMR90	lung:	n/a	n/a
33	POLR2A	chr11:47429357-47431205	HUVEC	blood vessel:	n/a	n/a
34	MXI1	chr11:47429253-47431626	IMR90	lung:	n/a	n/a
35	MAX	chr11:47429115-47431016	HCT-116	colon:	n/a	chr11:47430013-47430023
36	POLR2A	chr11:47430583-47430876	MCF10A-Er-Src	breast:	n/a	n/a
37	POLR2A	chr11:47429543-47430919	Gliobla	brain:	n/a	n/a
38	SIN3AK20	chr11:47430458-47430941	SK-N-SH	brain:	n/a	n/a
39	JUN	chr11:47428356-47430878	K562	blood:	n/a	chr11:47429695-47429705 chr11:47429695-47429705 chr11:47429695-47429705 chr11:47429695-47429705
40	CTCF	chr11:47429252-47430641	A549	lung:	n/a	chr11:47429638-47429651
41	POLR2A	chr11:47430530-47430979	Hela-S3	cervix:	n/a	n/a
42	MAX	chr11:47429228-47430989	HepG2	liver:	n/a	chr11:47430013-47430023
43	SIN3AK20	chr11:47429186-47431042	MCF-7	breast:	n/a	n/a
44	MAX	chr11:47429408-47431047	SK-N-SH	brain:	n/a	chr11:47430013-47430023
45	TFAP2C	chr11:47429386-47431572	Hela-S3	cervix:	n/a	chr11:47430834-47430849 chr11:47431382-47431397
46	BHLHE40	chr11:47430532-47430750	K562	blood:	n/a	n/a
47	RCOR1	chr11:47428771-47430664	K562	blood:	n/a	n/a
48	POLR2A	chr11:47430558-47430983	SK-N-SH	brain:	n/a	n/a
49	POLR2A	chr11:47429362-47431523	HUVEC	blood vessel:	n/a	n/a
50	POLR2A	chr11:47428926-47430894	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:47411629..47418031-chr11:47425327..47431880,15	K562	blood:
2	chr11:47429691..47431699-chr11:47584830..47587245,2	MCF-7	breast:
3	chr11:47290389..47294105-chr11:47428413..47432863,5	MCF-7	breast:
4	chr11:47428130..47431471-chr11:47462803..47464877,5	MCF-7	breast:
5	chr11:47205613..47207687-chr11:47429461..47432184,2	K562	blood:
6	chr11:47394067..47402014-chr11:47426765..47432976,19	K562	blood:
7	chr11:47289845..47291400-chr11:47428671..47431411,2	K562	blood:
8	chr11:47429268..47431582-chr20:56284094..56286955,2	MCF-7	breast:
9	chr11:47419914..47422605-chr11:47427478..47432259,7	K562	blood:
10	chr11:47430300..47430981-chr3:160283048..160283883,2	Hela-S3	cervix:
11	chr11:47197465..47200418-chr11:47428077..47430700,3	K562	blood:
12	chr11:47269451..47271860-chr11:47428590..47432270,5	K562	blood:
13	chr11:47391440..47404809-chr11:47427075..47436409,23	K562	blood:
14	chr11:47429560..47431457-chr11:47788267..47789854,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPI1-1	chr11:47430503-47430741	ENSG00000255197.1
2	lnc-SPI1-1	chr11:47430503-47430643	ENSG00000255197.1

Variant related genes	Relation type
SLC39A13	TF binding region
ENSG00000256746	Chromatin interaction
ENSG00000165912	Chromatin interaction
ENSG00000149187	Chromatin interaction
ENSG00000149182	Chromatin interaction
ENSG00000165917	Chromatin interaction
ENSG00000025434	Chromatin interaction
ENSG00000264583	Chromatin interaction
ENSG00000110536	Chromatin interaction
ENSG00000229320	Chromatin interaction
ENSG00000109920	Chromatin interaction
ENSG00000134575	Chromatin interaction
ENSG00000110514	Chromatin interaction
ENSG00000255197	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000186432	Chromatin interaction
ENSG00000124225	Chromatin interaction
ENSG00000066336	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	esv3330173	chr11:47289256-47450681	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	esv3416377	chr11:47289276-47450651	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv832141	chr11:47333180-47520993	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	nsv825871	chr11:47376020-47457537	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv554210	chr11:47380593-47449544	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
8	nsv541034	chr11:47404083-47440081	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
9	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
10	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
11	esv3328586	chr11:47428801-47431349	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	esv3353375	chr11:47429076-47431224	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47428600-47431200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr11:47429200-47430800	Active TSS	Lung	lung
3	chr11:47429200-47430800	Active TSS	Ovary	ovary
4	chr11:47429200-47431000	Active TSS	Psoas Muscle	Psoas
5	chr11:47429200-47431400	Active TSS	Aorta	Aorta
6	chr11:47429400-47430800	Active TSS	Left Ventricle	heart
7	chr11:47429400-47430800	Active TSS	Right Ventricle	heart
8	chr11:47429400-47431000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:47429400-47431000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:47429400-47431000	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr11:47429400-47431000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:47429400-47431000	Active TSS	Esophagus	oesophagus
13	chr11:47429400-47431200	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr11:47429400-47431400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr11:47429400-47431400	Active TSS	HSMM	muscle
16	chr11:47429400-47431600	Active TSS	Fetal Kidney	kidney
17	chr11:47429600-47430800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:47429600-47430800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:47429600-47430800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:47429600-47430800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:47429600-47430800	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr11:47429600-47430800	Active TSS	Colon Smooth Muscle	Colon
23	chr11:47429600-47431000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:47429600-47431000	Active TSS	NHEK	skin
25	chr11:47429600-47431400	Active TSS	Muscle Satellite Cultured Cells	--
26	chr11:47429600-47431600	Active TSS	NHLF	lung
27	chr11:47430000-47431000	Active TSS	Right Atrium	heart
28	chr11:47430200-47431000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr11:47430200-47431000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr11:47430200-47431200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr11:47430200-47431200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr11:47430200-47431400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr11:47430200-47431800	Flanking Active TSS	Colonic Mucosa	Colon
34	chr11:47430400-47430800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr11:47430400-47430800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
36	chr11:47430400-47430800	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr11:47430400-47430800	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr11:47430400-47430800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:47430400-47430800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr11:47430400-47430800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:47430400-47430800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:47430400-47430800	Flanking Active TSS	Spleen	Spleen
43	chr11:47430400-47430800	Flanking Active TSS	GM12878-XiMat	blood
44	chr11:47430400-47430800	Bivalent/Poised TSS	HepG2	liver
45	chr11:47430400-47431000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:47430400-47431000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:47430400-47431000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr11:47430400-47431000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:47430400-47431000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
50	chr11:47430400-47431000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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