Variant report

Variant	rs3777147
Chromosome Location	chr5:135666489-135666490
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10213769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11948153	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11950418	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs11954403	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11957982	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13156906	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13156969	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13158017	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13158133	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13158359	0.85[EUR][1000 genomes]
rs13158415	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13162436	0.85[EUR][1000 genomes]
rs13164177	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13165205	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171723	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13174278	0.84[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs13174705	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13174755	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13177941	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13181603	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs13182027	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs13185795	0.84[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13186797	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs1499761	0.84[EUR][1000 genomes]
rs1499771	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1499772	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17211941	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs17211962	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17695203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17762742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs17791011	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs17791023	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34190055	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34223526	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34488680	0.84[EUR][1000 genomes]
rs34665015	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34760171	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34808451	0.85[EUR][1000 genomes]
rs34934613	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34999969	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35003312	0.85[EUR][1000 genomes]
rs35118298	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35175010	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35189853	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35234652	0.85[EUR][1000 genomes]
rs35555318	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35695188	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36139242	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3756699	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs4501337	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55633021	0.94[EUR][1000 genomes]
rs55635821	0.94[EUR][1000 genomes]
rs55726215	0.85[EUR][1000 genomes]
rs55832007	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55996753	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62385831	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62387388	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62387410	0.85[EUR][1000 genomes]
rs6871232	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71589310	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7703358	0.85[EUR][1000 genomes]
rs7705405	0.82[EUR][1000 genomes]
rs9687860	0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3777147	IRF1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:135666000-135666600	Enhancers	Fetal Intestine Large	intestine
2	chr5:135666400-135666800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links