Variant report

Variant	rs377735219
Chromosome Location	chr6:150690152-150690153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:150689799-150690236	HepG2	liver:	n/a	n/a
2	ELF1	chr6:150689944-150690216	HepG2	liver:	n/a	n/a
3	RFX5	chr6:150689995-150690215	HepG2	liver:	n/a	n/a
4	ATF1	chr6:150690117-150690163	K562	blood:	n/a	n/a
5	ZEB1	chr6:150689796-150690293	HepG2	liver:	n/a	n/a
6	FOXA1	chr6:150690004-150690214	T-47D	breast:	n/a	n/a
7	TEAD4	chr6:150689831-150690283	HepG2	liver:	n/a	n/a
8	CREB1	chr6:150689950-150690430	HepG2	liver:	n/a	chr6:150690146-150690159
9	HNF4A	chr6:150689783-150690224	HepG2	liver:	n/a	chr6:150689991-150690006 chr6:150689990-150690008 chr6:150690035-150690050 chr6:150690035-150690050 chr6:150689993-150690005 chr6:150690036-150690050 chr6:150689992-150690005 chr6:150690037-150690049
10	FOXA1	chr6:150690003-150690254	T-47D	breast:	n/a	n/a
11	ZEB1	chr6:150689747-150690353	HepG2	liver:	n/a	n/a
12	HNF4A	chr6:150689804-150690213	HepG2	liver:	n/a	chr6:150689991-150690006 chr6:150689990-150690008 chr6:150690035-150690050 chr6:150690035-150690050 chr6:150689993-150690005 chr6:150690036-150690050 chr6:150689992-150690005 chr6:150690037-150690049
13	BHLHE40	chr6:150689894-150690301	HepG2	liver:	n/a	n/a
14	CREB1	chr6:150689878-150690440	HepG2	liver:	n/a	chr6:150690146-150690159
15	HNF4G	chr6:150689839-150690209	HepG2	liver:	n/a	chr6:150689990-150690008 chr6:150689992-150690007 chr6:150690035-150690050 chr6:150689993-150690005 chr6:150690036-150690050 chr6:150689992-150690005 chr6:150690036-150690051 chr6:150690037-150690049

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:150690125-150690175	PFSK-1	brain:	n/a
2	chr6:150690125-150690175	RPTEC	kidney:	n/a
3	chr6:150690125-150690175	SK-N-MC	brain:	n/a
4	chr6:150690125-150690175	Caco-2	colon:	n/a
5	chr6:150690143-150690193	RPTEC	kidney:	n/a
6	chr6:150690143-150690193	HMEC	breast:	n/a
7	chr6:150690143-150690193	AG09309	skin:	n/a
8	chr6:150690143-150690193	LNCaP	prostate:	n/a
9	chr6:150690143-150690193	NHBE	bronchial:	n/a
10	chr6:150690143-150690193	GM12891	blood:	n/a
11	chr6:150690143-150690193	HPAEpiC	pulmonary alveolar:	n/a
12	chr6:150690143-150690193	CMK	blood:	n/a
13	chr6:150690125-150690175	IMR90	lung:	fetal
14	chr6:150690125-150690175	HepG2	liver:	n/a
15	chr6:150690143-150690193	HRE	kidney:	n/a
16	chr6:150690143-150690193	Hela-S3	cervix:	n/a
17	chr6:150690125-150690175	AoSMC	blood vessel:	n/a
18	chr6:150690143-150690193	HEEpiC	esophagus:	n/a
19	chr6:150690143-150690193	SK-N-SH	brain:	n/a
20	chr6:150690143-150690193	T-47D	breast:	n/a
21	chr6:150690143-150690193	PrEC	prostate:	n/a
22	chr6:150690125-150690175	GM06990	blood:	n/a
23	chr6:150690143-150690193	U87	brain:	n/a
24	chr6:150690143-150690193	HRPEpiC	eye:	n/a
25	chr6:150690143-150690193	HL-60	blood:	n/a
26	chr6:150690125-150690175	HEEpiC	esophagus:	n/a
27	chr6:150690125-150690175	PANC-1	pancreas:	n/a
28	chr6:150690143-150690193	ProgFib	skin:	n/a
29	chr6:150690125-150690175	NHDF-neo	bronchial:	n/a
30	chr6:150690143-150690193	PFSK-1	brain:	n/a
31	chr6:150690125-150690175	NHBE	bronchial:	n/a
32	chr6:150690143-150690193	NHDF-neo	bronchial:	n/a
33	chr6:150690125-150690175	HAEpiC	amniotic membrane:	n/a
34	chr6:150690125-150690175	HRPEpiC	eye:	n/a
35	chr6:150690143-150690193	AG09319	gingival:	n/a
36	chr6:150690125-150690175	BJ	skin:	n/a
37	chr6:150690143-150690193	HEK293	kidney:	embryo
38	chr6:150690143-150690193	NB4	blood:	n/a
39	chr6:150690143-150690193	Hepatocyte	liver:	n/a
40	chr6:150690143-150690193	HCM	heart:	n/a
41	chr6:150690125-150690175	MCF-7	breast:	n/a
42	chr6:150690143-150690193	GM12878	blood:	n/a
43	chr6:150690143-150690193	HCT-116	colon:	n/a
44	chr6:150690143-150690193	NT2-D1	testis:	n/a
45	chr6:150690143-150690193	GM12892	blood:	n/a
46	chr6:150690125-150690175	NH-A	brain:	n/a
47	chr6:150690125-150690175	T-47D	breast:	n/a
48	chr6:150690125-150690175	GM12891	blood:	n/a
49	chr6:150690125-150690175	HL-60	blood:	n/a
50	chr6:150690125-150690175	K562	blood:	n/a

Variant related genes	Relation type
IYD	TF binding region
IYD	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3393784	chr6:150689259-150693557	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150688800-150690200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:150689200-150693200	Enhancers	Fetal Intestine Large	intestine
3	chr6:150689200-150693400	Enhancers	Fetal Intestine Small	intestine
4	chr6:150689400-150690400	Enhancers	HepG2	liver
5	chr6:150689600-150690800	Active TSS	Duodenum Mucosa	Duodenum
6	chr6:150689600-150691000	Enhancers	Stomach Mucosa	stomach
7	chr6:150689800-150691800	Flanking Active TSS	Liver	Liver
8	chr6:150690000-150690200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:150690000-150690400	Enhancers	Pancreas	Pancrea
10	chr6:150690000-150691600	Active TSS	Rectal Mucosa Donor 29	rectum

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